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Status
Public on May 20, 2010
Title
SFGF HEEBO Human Set v1.00 with custom orthopox oligos
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Homo sapiens Manufacturer
Stanford Functional Genomics Facility
Manufacture protocol
The Human Exonic Evidence Based Oligonucleotide (HEEBO) array was developed by a group of researchers from Stanford University with collaborators from UCSF, Rockefeller, Basel, and the Stowers Institute. This custom microarray inlcudes the HEEBO human oligonucleotide set with a custom set of probes for orthopox (vaccinia, variola, and monkeypox) genes. This set consists of 47,814 70mer probes that were designed using a transcriptome-based annotation of exonic structure for genomic loci.
Catalog number
CPAV
Support
glass
Coating
polysine
Description
Probes include:
Web link
http://www.microarray.org/sfgf/ Submission date
Nov 18, 2009
Last update date
May 20, 2010
Contact name
Judy Yen
E-mail(s)
jyen@bu.edu Phone
617-414-8918
Organization name
Boston University School of Medicine
Department
NEIDL/Microbiology
Street address
620 Albany St., Rm 401H
City
Boston
State/province
MA
ZIP/Postal code
02118
Country
USA
Samples (220)
GSM550127 , GSM550128 , GSM550129 , GSM550130 , GSM550131 , GSM550132
GSM550133 ,
GSM550134 ,
GSM550135 ,
GSM550136 ,
GSM550137 ,
GSM550138 ,
GSM550139 ,
GSM550140 ,
GSM550141 ,
GSM550142 ,
GSM550143 ,
GSM550144 ,
GSM550145 ,
GSM550146 ,
GSM550147 ,
GSM550148 ,
GSM550149 ,
GSM550150 ,
GSM550151 ,
GSM550152 ,
GSM550153 ,
GSM550154 ,
GSM550155 ,
GSM550156 ,
GSM550157 ,
GSM550158 ,
GSM550159 ,
GSM550160 ,
GSM550161 ,
GSM550162 ,
GSM550163 ,
GSM550164 ,
GSM550165 ,
GSM550166 ,
GSM550167 ,
GSM550168 ,
GSM550169 ,
GSM550170 ,
GSM550171 ,
GSM550172 ,
GSM550173 ,
GSM550174 ,
GSM550175 ,
GSM550176 ,
GSM550177 ,
GSM550178 ,
GSM550179 ,
GSM550180 ,
GSM550181 ,
GSM550182 ,
GSM550183 ,
GSM550184 ,
GSM550185 ,
GSM550186 ,
GSM550187 ,
GSM550188 ,
GSM550189 ,
GSM550190 ,
GSM550191 ,
GSM550192 ,
GSM550193 ,
GSM550194 ,
GSM550195 ,
GSM550196 ,
GSM550197 ,
GSM550198 ,
GSM550199 ,
GSM550200 ,
GSM550201 ,
GSM550202 ,
GSM550203 ,
GSM550204 ,
GSM550205 ,
GSM550206 ,
GSM550207 ,
GSM550208 ,
GSM550209 ,
GSM550210 ,
GSM550211 ,
GSM550212 ,
GSM550213 ,
GSM550214 ,
GSM550215 ,
GSM550216 ,
GSM550217 ,
GSM550218 ,
GSM550219 ,
GSM550220 ,
GSM550221 ,
GSM550222 ,
GSM550223 ,
GSM550224 ,
GSM550225 ,
GSM550226 ,
GSM550227 ,
GSM550228 ,
GSM550229 ,
GSM550230 ,
GSM550231 ,
GSM550232 ,
GSM550233 ,
GSM550234 ,
GSM550235 ,
GSM550236 ,
GSM550237 ,
GSM550238 ,
GSM550239 ,
GSM550240 ,
GSM550241 ,
GSM550242 ,
GSM550243 ,
GSM550244 ,
GSM550245 ,
GSM550246 ,
GSM550247 ,
GSM550248 ,
GSM550249 ,
GSM550250 ,
GSM550251 ,
GSM550252 ,
GSM550253 ,
GSM550254 ,
GSM550255 ,
GSM613079 ,
GSM613080 ,
GSM613081 ,
GSM613082 ,
GSM613083 ,
GSM613084 ,
GSM613085 ,
GSM613086 ,
GSM613087 ,
GSM613088 ,
GSM613089 ,
GSM613090 ,
GSM613091 ,
GSM613092 ,
GSM613093 ,
GSM613094 ,
GSM613095 ,
GSM613096 ,
GSM613097 ,
GSM613098 ,
GSM613099 ,
GSM613100 ,
GSM613101 ,
GSM613102 ,
GSM613103 ,
GSM613104 ,
GSM613105 ,
GSM613106 ,
GSM613107 ,
GSM613108 ,
GSM613109 ,
GSM613110 ,
GSM613111 ,
GSM613112 ,
GSM613113 ,
GSM613114 ,
GSM613115 ,
GSM613116 ,
GSM613117 ,
GSM613118 ,
GSM613119 ,
GSM613120 ,
GSM613121 ,
GSM613122 ,
GSM613123 ,
GSM613124 ,
GSM613125 ,
GSM613126 ,
GSM613127 ,
GSM613128 ,
GSM613129 ,
GSM613130 ,
GSM613131 ,
GSM613132 ,
GSM613133 ,
GSM613134 ,
GSM613135 ,
GSM613136 ,
GSM613137 ,
GSM613138 ,
GSM613139 ,
GSM613140 ,
GSM613141 ,
GSM613142 ,
GSM613143 ,
GSM613144 ,
GSM613145 ,
GSM613146 ,
GSM613147 ,
GSM613148 ,
GSM613149 ,
GSM613150 ,
GSM613151 ,
GSM613152 ,
GSM613153 ,
GSM613154 ,
GSM613155 ,
GSM613156 ,
GSM613157 ,
GSM613158 ,
GSM613159 ,
GSM613160 ,
GSM613161 ,
GSM613162 ,
GSM613163 ,
GSM613164 ,
GSM613165 ,
GSM613166 ,
GSM613167 ,
GSM613168 ,
GSM613169 Series (2)
GSE22121 Smallpox vaccination with LC16m8 vaccinia virus provides a gene expression profile similar to DryVax vaccination
GSE24943 Therapeutics of Ebola hemorrhagic fever: Whole-genome transcriptional analysis of successful disease mitigation
Data table header descriptions ID unique oligonucleotide identification number
GI_NUMBER NCBI sequence identification number
GB_ACC GenBank Accession number
SEQUENCE oligonucleotide probe sequence
OLIGO_POS oligonucleotide position on human genome HG17v12
LOCUSLINK LocusLink ID number
HEEBO_PROBE_NAME HEEBO Probe name
PROBE_TYPE type of probe
GENE_NAME Gene description
SPOT_ID
Data table ID GI_NUMBER GB_ACC SEQUENCE OLIGO_POS LOCUSLINK HEEBO_PROBE_NAME PROBE_TYPE GENE_NAME SPOT_ID hCA045328
GTTGCTGGATAGTTTTTACTGCCAGACCGCGCGCCTGAAGATATAGAAGATAATCGCGAACATCTTCAGG
AFFX-CreX-5_at_173_REVCOMP
control, antisense
Control, antisense: Phage P1 {Affymetrix doping antisense}
Control
hCA045389
CCGGGATCACGATTTCGTCGTTGTTGAACGCCGGCATCCCGAAGCCGCAACGGATCACCTGTACGCAGGC
AmbionRNASpike8_761_REVCOMP
control, antisense
Control, antisense: Escherichia coli {Ambion doping antisense}
Control
hCA045395
GATTCTCGTTTTGGAAGCAACTTCCTCAGAGACATTCTTCTTTAGCCAACCGCGGACAGCTACATGGACT
gi|7839390|gb|AF247559.1|AF247559_788_REVCOMP
control, antisense
Control, antisense: Arabidopsis thaliana {Stratagene Arabidopsis doping antisense}
Control
hCA045423
GGGATGATTTCGGCCAAGAGGAGAGACTTTGCGCCAGTTCGGAGGTTTTCCGCGGGTCGGCTTTCAGCGC
AmbionRNASpike6_EC13_REVCOMP
control, antisense
Control, antisense: Ambion {Ambion doping (picked by Ambion) antisense}
Control
hCA045439
AGATGGCGCGGCAACACCATTTTTTCTGACCCGGCAAAACAGGTAGTTATTCGGATCATCAGCTACACCA
AFFX-CreX-3_at_79_REVCOMP
control, antisense
Control, antisense: Phage P1 {Affymetrix doping antisense}
Control
hCA045498
CTAACGGCAGGGATTCGATATCTCCCGCCAGATAATGGTCTGCGGCATCCTTCTGGCGTGCCTGAACAAG
AFFX-BioC-5_at_200_REVCOMP
control, antisense
Control, antisense: Escherichia coli {Affymetrix doping antisense}
Control
hCA045528
ATCCTTGGAGACGGAATTCGTGCATGACCCAATCGGTTTTACGGCCTCGAGGAGCTCGACCTTGATAGAA
gi|6649235|gb|AF198054.1|AF198054_460_REVCOMP
control, antisense
Control, antisense: Arabidopsis thaliana {Stratagene Arabidopsis doping antisense}
Control
hCA045530
ACTGCTGGGCGATCTGTTGCGCGAAGTGGTATGGCCGACAGATGTGTCCACGCTGGATGTTGATGCAATG
AmbionRNASpike2_EC12_REVCOMP
control, antisense
Control, antisense: Ambion {Ambion doping (picked by Ambion) antisense}
Control
hCA045532
GCTTCCGTTTTAGCAATATTCTTATACAGGTTATAGCGTTTAAGATGATTCGCCGGATCGCTGGCCCGGT
AmbionRNASpike4_EC15_REVCOMP
control, antisense
Control, antisense: Ambion {Ambion doping (picked by Ambion) antisense}
Control
hCA045541
GGAATGACAACGACTACGTCAATGTCAGCATTCGGGACGCGGATCATTTGGGTCTCGTCATCCTCATGCA
gi|40210|emb|X04603.1|BSTHRBC_1744_REVCOMP
control, antisense
Control, antisense: Bacillus subtilis {B. subtilis doping antisense}
Control
hCA045542
GCAGTCGGGCGTCCGGAATAGTCCTTTAACAGCTTATAATACTCTTCACGAAAAGCGGGATCATCCTTGA
gi|143767|gb|K01391.1|BACTRP_4635_REVCOMP
control, antisense
Control, antisense: Bacillus subtilis {B. subtilis doping antisense}
Control
hCA045589
CATCACCAAAGGCCATGCAATCGCGCAACGATAAACCTAAATGTTGGGTCAGCACCGTCAATGCAGCGCC
AmbionRNASpike1_EC2_REVCOMP
control, antisense
Control, antisense: Ambion {Ambion doping (picked by Ambion) antisense}
Control
hCA045599
ACAAAGACAAGGTAAATATCAGCTTAGATAGCCGTCTTATTTTACGTATACGAAACCATACTCTTCAGGC
gi|8571922|gb|AF159801.1|AF159801_440_REVCOMP
control, antisense
Control, antisense: Arabidopsis thaliana {Stratagene Arabidopsis doping antisense}
Control
hCA045609
TGTGCAGTCAACATCGCGTGATTAATACAGCCGAGTTTCACACCAACTACCAGTATCACCGGCAGTTGTT
AFFX-BioDn-3_at_64_REVCOMP
control, antisense
Control, antisense: Escherichia coli {Affymetrix doping antisense}
Control
hCA045614
CAGCCATTCTGATACGACCAACATTCCCGGCGTTTGGGAGTGGAACTCCGGCGGATACGAATTTAGACTT
gi|16206|emb|X56062.1|ATCABI_173_REVCOMP
control, antisense
Control, antisense: Arabidopsis thaliana {Stratagene Arabidopsis doping antisense}
Control
hCA045640
TTCAGCACGACTTAGCGCTCGCCGCTTTATTTGCCGGCGTATTCATCGGAGCCGGACTGGGTATTATTTT
gi|755600|gb|L38424.1|BACJOJC_554_REVCOMP
control, antisense
Control, antisense: Bacillus subtilis {B. subtilis doping antisense}
Control
hCA045725
CACCTGCTGCGCTTCAAACAGCAGATCCAGCAACGGTTTTTCAAATAATTCTGTGACTTGCGACAATGTC
AFFX-BioB-5_at_0_REVCOMP
control, antisense
Control, antisense: Escherichia coli {Affymetrix doping antisense}
Control
hCA045740
CCGGGATCACGATTTCGTCGTTGTTGAACGCCGGCATCCCGAAGCCGCAACGGATCACCTGTACGCAGGC
AmbionRNASpike8_761_REVCOMP
control, antisense
Control, antisense: Escherichia coli {Ambion doping antisense}
Control
hCA045759
AAGAGCGAGGAGAACACGGGAATATCAATACACGATCACCACCGAGAGACGTCGCGATGGCTTTACCTTC
gi|6137137|gb|AF168390.1|AF168390_21_REVCOMP
control, antisense
Control, antisense: Arabidopsis thaliana {Stratagene Arabidopsis doping antisense}
Control
hCA045765
CCTTTGGAGATCAGGTAATCAACAACAGACTGAGCACGGCGCTCGGACAGACCCTGGTTGTAAGCGTCAG
AmbionRNASpike5_EC17_REVCOMP
control, antisense
Control, antisense: Ambion {Ambion doping (picked by Ambion) antisense}
Control
47806 13914 Kbytes .Supplementary data files not provided
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