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Platform GPL9712 Query DataSets for GPL9712
Status Public on Nov 23, 2009
Title Agilent-015354 Bovine Oligo Microarray (4x44K) (Probe Name version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Bos taurus
Manufacturer Agilent Technologies
Manufacture protocol See manufacturer’s web site at http://www.agilent.com/
Catalog number G2514F
 
Description Design ID: 015354
Agilent has developed a genome-wide bovine microarray to enable scientists to study gene expression profiling at the global level. Agilent's Bovine Oligo – 4X44K microarray covers 21,475 unique genes and transcripts of Bos Taurus, two probes for each gene are produced. Oligonucleotides, 60-mers, are synthesized directly on glass slide using the Agilent’s SurePrint Technology.

*** The ID column includes the Agilent Probe Names. A different version of this platform with the Agilent Feature Extraction feature numbers in the ID column is assigned accession number GPL7053.
 
Submission date Nov 23, 2009
Last update date Apr 06, 2012
Organization Agilent Technologies
E-mail(s) cag_sales-na@agilent.com
Phone 877-424-4536
URL http://www.agilent.com
Department
Street address
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Samples (216) GSM474537, GSM474538, GSM474539, GSM474540, GSM474541, GSM474542 
Series (10)
GSE19140 Transcriptional profiling of bovine endometrial tissue at day 17 of the reproductive cycle
GSE22579 Colony stimulating factor 2 causes changes in the transcriptome of the bovine preimplantation embryo
GSE25005 Gene expression study of bovine skeletal muscle
Relations
Alternative to GPL7053

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
REFSEQ RefSeq Accession number
GB_ACC GenBank Accession number
GENE Entrez Gene ID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE REFSEQ GB_ACC GENE GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
(+)E1A_r60_1 (+)E1A_r60_1 pos
(+)E1A_r60_3 (+)E1A_r60_3 pos
(+)E1A_r60_a104 (+)E1A_r60_a104 pos
(+)E1A_r60_a107 (+)E1A_r60_a107 pos
(+)E1A_r60_a135 (+)E1A_r60_a135 pos
(+)E1A_r60_a20 (+)E1A_r60_a20 pos
(+)E1A_r60_a22 (+)E1A_r60_a22 pos
(+)E1A_r60_a97 (+)E1A_r60_a97 pos
(+)E1A_r60_n11 (+)E1A_r60_n11 pos
(+)E1A_r60_n9 (+)E1A_r60_n9 pos
(+)eQC-39 (+)eQC-39 pos
(+)eQC-40 (+)eQC-40 pos
(+)eQC-41 (+)eQC-41 pos
(+)eQC-42 (+)eQC-42 pos
(-)3xSLv1 (-)3xSLv1 neg
A_73_100000 A_73_100000 FALSE chr9:087556343-087556402 CGAGTGCCAGGGTTAGAACGCCAATAATACTCAGTACCGCGAATAAAGGGCTTGCTCCCA
A_73_100001 A_73_100001 FALSE tc|TC471208 chr4:50536477-50536536 TGAACAATTCTTTATTCTGTTTTTTCATACTGTATTCACTAAATTAAGTAGCAACTCATT
A_73_100002 A_73_100002 FALSE XM_002686189 XM_002686189 511591 SORT1 sortilin 1 Bt.103117 gb|XM_002703890|ref|XM_002686189 chr3:36784653-36784712 PREDICTED: Bos taurus sortilin 1 (SORT1), mRNA [XM_002703890] TATTCGCTTCCTCTTAGGTTGCTGCTCTACATGGAGCTGTGACTAGACATGTTTTCAGTT
A_73_100003 A_73_100003 FALSE chrX:049340961-049340850 ATGACCTCATGGATGGGGACGAAGGACTGGACTTCAACTTTGAGCCAGGTGTCCAGCTAG
A_73_100004 A_73_100004 FALSE NM_001001153 NM_001001153 407225 MOGAT1 monoacylglycerol O-acyltransferase 1 Bt.28476 ENSBTAT00000011091 ref|NM_001001153|ens|ENSBTAT00000011091|gb|AJ519785|tc|TC397110 chr2:115358688-115358747 Bos taurus monoacylglycerol O-acyltransferase 1 (MOGAT1), mRNA [NM_001001153] GO:0003846(2-acylglycerol O-acyltransferase activity)|GO:0004144(diacylglycerol O-acyltransferase activity)|GO:0005624(membrane fraction)|GO:0005783(endoplasmic reticulum)|GO:0005789(endoplasmic reticulum membrane)|GO:0006071(glycerol metabolic process)|GO:0006651(diacylglycerol biosynthetic process)|GO:0008610(lipid biosynthetic process)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016747(transferase activity, transferring acyl groups other than amino-acyl groups) GTTCCACGCCAGAGGAATTTTTCAATACAATTTTGGCCTAATCCCCTATAGGAAGCCCAT

Total number of rows: 21536

Table truncated, full table size 8082 Kbytes.




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