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Platform GPL9738 Query DataSets for GPL9738
Status Public on Dec 15, 2009
Title Plants 4K miRNA LC_MRA-1038_miRNAPlants_11.0 + Bn_PsRNAs
Technology type in situ oligonucleotide
Distribution custom-commercial
Organisms Physcomitrium patens; Pinus taeda; Populus trichocarpa; Arabidopsis thaliana; Brassica napus; Brassica rapa; Brassica oleracea; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Triticum aestivum; Zea mays; Vitis vinifera; Selaginella moellendorffii
Manufacturer LC Sciences
Manufacture protocol Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. The detection probes are made by in situ synthesis using PGR (photogenerated reagent) chemistry.
Support silicon
 
Description Plant miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 11.0 and additional custom small RNA sequences from Brassica napus phloem sap (Bn_PsRNAs)
 
Web link http://www.LCsciences.com
Contributor(s) Buhtz A, Kehr J
Submission date Dec 02, 2009
Last update date Dec 15, 2009
Contact name Anja Buhtz
E-mail(s) anja.buhtz@upm.es
Organization name Centro de Biotecnologia y Genomica de Plantas
Lab 280
Street address Campus de Montegancedo, M40,km38
City Madrid
ZIP/Postal code 28223
Country Spain
 
Samples (3) GSM507517, GSM507528, GSM507529
Series (1)
GSE20263 Small RNAs in different tissues and phloem of oilseed rape under nutrient stress conditions

Data table header descriptions
ID
Probe_ID Name of the probe on the chip
Target_Seq Target sequence (5’ to 3’) of the probe
Row Row of the probe position on the chip
Column Column of the probe position on the chip
Group General function of the particular probe on the chip: experimental/control
Comment Information of the sequence: mature miRNA/custom sequence
SEQUENCE sequence of probe
miRNA_ID

Data table
ID Probe_ID Target_Seq Row Column Group Comment SEQUENCE miRNA_ID
1 Bn_PsRNA_01 UGAACAAGGUUUCCCAGAUGC 16 23 experimental Custom Sequence GCATCTGGGAAACCTTGTTCA PsRNA_01
2 Bn_PsRNA_01 UGAACAAGGUUUCCCAGAUGC 52 13 experimental Custom Sequence GCATCTGGGAAACCTTGTTCA PsRNA_01
3 Bn_PsRNA_01 UGAACAAGGUUUCCCAGAUGC 88 3 experimental Custom Sequence GCATCTGGGAAACCTTGTTCA PsRNA_01
4 Bn_PsRNA_01 UGAACAAGGUUUCCCAGAUGC 108 23 experimental Custom Sequence GCATCTGGGAAACCTTGTTCA PsRNA_01
5 Bn_PsRNA_01 UGAACAAGGUUUCCCAGAUGC 121 23 experimental Custom Sequence GCATCTGGGAAACCTTGTTCA PsRNA_01
6 Bn_PsRNA_02 UUGAAAAACAGAGACAAUAAAGGC 11 29 experimental Custom Sequence GCCTTTATTGTCTCTGTTTTTCAA PsRNA_02
7 Bn_PsRNA_02 UUGAAAAACAGAGACAAUAAAGGC 47 19 experimental Custom Sequence GCCTTTATTGTCTCTGTTTTTCAA PsRNA_02
8 Bn_PsRNA_02 UUGAAAAACAGAGACAAUAAAGGC 83 9 experimental Custom Sequence GCCTTTATTGTCTCTGTTTTTCAA PsRNA_02
9 Bn_PsRNA_02 UUGAAAAACAGAGACAAUAAAGGC 103 29 experimental Custom Sequence GCCTTTATTGTCTCTGTTTTTCAA PsRNA_02
10 Bn_PsRNA_02 UUGAAAAACAGAGACAAUAAAGGC 116 29 experimental Custom Sequence GCCTTTATTGTCTCTGTTTTTCAA PsRNA_02
11 Bn_PsRNA_03 CCAUGGGAAUCGAACUAGGGGUGC 10 26 experimental Custom Sequence GCACCCCTAGTTCGATTCCCATGG PsRNA_03
12 Bn_PsRNA_03 CCAUGGGAAUCGAACUAGGGGUGC 46 16 experimental Custom Sequence GCACCCCTAGTTCGATTCCCATGG PsRNA_03
13 Bn_PsRNA_03 CCAUGGGAAUCGAACUAGGGGUGC 82 6 experimental Custom Sequence GCACCCCTAGTTCGATTCCCATGG PsRNA_03
14 Bn_PsRNA_03 CCAUGGGAAUCGAACUAGGGGUGC 102 26 experimental Custom Sequence GCACCCCTAGTTCGATTCCCATGG PsRNA_03
15 Bn_PsRNA_03 CCAUGGGAAUCGAACUAGGGGUGC 115 26 experimental Custom Sequence GCACCCCTAGTTCGATTCCCATGG PsRNA_03
16 Bn_PsRNA_04 AAUAGGGAGGGCAAGGAGUGC 16 27 experimental Custom Sequence GCACTCCTTGCCCTCCCTATT PsRNA_04
17 Bn_PsRNA_04 AAUAGGGAGGGCAAGGAGUGC 52 17 experimental Custom Sequence GCACTCCTTGCCCTCCCTATT PsRNA_04
18 Bn_PsRNA_04 AAUAGGGAGGGCAAGGAGUGC 88 7 experimental Custom Sequence GCACTCCTTGCCCTCCCTATT PsRNA_04
19 Bn_PsRNA_04 AAUAGGGAGGGCAAGGAGUGC 108 27 experimental Custom Sequence GCACTCCTTGCCCTCCCTATT PsRNA_04
20 Bn_PsRNA_04 AAUAGGGAGGGCAAGGAGUGC 121 27 experimental Custom Sequence GCACTCCTTGCCCTCCCTATT PsRNA_04

Total number of rows: 3281

Table truncated, full table size 339 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9738_sequences for Platform_miRNA_release_11.0_14Dec09.txt.gz 13.0 Kb (ftp)(http) TXT

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