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| Status |
Public on Oct 04, 2010 |
| Title |
SMD Print_1538 Helicobacter pylori |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Helicobacter pylori |
| Manufacturer |
Stanford Functional Genomics Facility, Stanford School of Medicine |
| Manufacture protocol |
Material is transferred from microtiter plate wells to the slide surface by an automated print head
|
| Support |
glass |
| |
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| |
|
| Submission date |
Dec 04, 2009 |
| Last update date |
Oct 04, 2010 |
| Contact name |
Nina Reda Salama |
| E-mail(s) |
nsalama@fhcrc.org
|
| Phone |
206-667-1540
|
| Fax |
206-667-6524
|
| Organization name |
Fred Hutchinson Cancer Research Center
|
| Department |
Division of Human Biology
|
| Lab |
Mailstop C3-168
|
| Street address |
1100 Fairview Ave. N
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
19024 |
| Country |
USA |
| |
|
| Samples (20)
|
GSM480327, GSM480328, GSM480329, GSM480330, GSM480334, GSM480336
GSM480338, GSM480340, GSM480341, GSM480343, GSM480344, GSM480346, GSM480347, GSM480348, GSM552349, GSM552350, GSM552351, GSM552352, GSM552353, GSM552458
|
| Series (1) |
| GSE19334 |
Dissecting the transcriptional response to DNA damage in Helicobacter pylori. |
|
| Data table header descriptions |
| ID |
|
| MetaColumn |
|
| MetaRow |
|
| Column |
|
| Row |
|
| Reporter Name |
|
| Reporter Species |
|
| Reporter BioSequence [length] |
|
| Repoter Biosequence Type |
|
| Repoter BioSequence PolymerType |
|
| Reporter Group[role] |
|
| Reporter ControlType |
|
| ORF |
ORF Name |
| CompositeSequence BioSequence [Process] |
|
| CompositeSequence BioSequence [Gene Symbol] |
|
| CompositeSequence BioSequence [TIGRID] |
|
| CompositeSequence Biosequence Type |
|
| CompositeSequence BioSequence PolymerType |
|
| SPOT_ID |
|
| Data table |
| ID |
MetaColumn |
MetaRow |
Column |
Row |
Reporter Name |
Reporter Species |
Reporter BioSequence [length] |
Repoter Biosequence Type |
Repoter BioSequence PolymerType |
Reporter Group[role] |
Reporter ControlType |
ORF |
CompositeSequence BioSequence [Process] |
CompositeSequence BioSequence [Gene Symbol] |
CompositeSequence BioSequence [TIGRID] |
CompositeSequence Biosequence Type |
CompositeSequence BioSequence PolymerType |
SPOT_ID |
| 1 |
1 |
1 |
1 |
1 |
HPY1565 |
Helicobacter pylori |
1727 |
PCR_amplicon |
DNA |
Experimental |
|
HP1565 |
Cell envelope, Biosynthesis of murein sacculus and peptidoglycan |
pbp2 |
HP1565 |
gene |
DNA |
|
| 18 |
1 |
1 |
1 |
2 |
HPY0363 |
Helicobacter pylori |
574 |
PCR_amplicon |
DNA |
Experimental |
|
HP0363 |
Translation, Protein modification |
pcm |
HP0363 |
gene |
DNA |
|
| 35 |
1 |
1 |
1 |
3 |
HPY0141 |
Helicobacter pylori |
856 |
PCR_amplicon |
DNA |
Experimental |
|
HP0141 |
Transport and binding proteins, Carbohydrates, organic alcohols, and acids |
lctP |
HP0141 |
gene |
DNA |
|
| 52 |
1 |
1 |
1 |
4 |
HPY1300 |
Helicobacter pylori |
1197 |
PCR_amplicon |
DNA |
Experimental |
|
HP1300 |
Cellular Processes, Protein and peptide secretion |
secY |
HP1300 |
gene |
DNA |
|
| 69 |
1 |
1 |
1 |
5 |
HPY1330 |
Helicobacter pylori |
291 |
PCR_amplicon |
DNA |
Experimental |
|
HP1330 |
Hypothetical, General |
|
HP1330 |
gene |
DNA |
|
| 86 |
1 |
1 |
1 |
6 |
HPY0851 |
Helicobacter pylori |
625 |
PCR_amplicon |
DNA |
Experimental |
|
HP0851 |
Hypothetical, General |
|
HP0851 |
gene |
DNA |
|
| 103 |
1 |
1 |
1 |
7 |
HPY0180 |
Helicobacter pylori |
1225 |
PCR_amplicon |
DNA |
Experimental |
|
HP0180 |
Cell envelope, Other |
cute |
HP0180 |
gene |
DNA |
|
| 120 |
1 |
1 |
1 |
8 |
HPY1775 |
Helicobacter pylori |
497 |
PCR_amplicon |
DNA |
Experimental |
|
HP0259 |
DNA metabolism,Degradation of DNA |
xseA |
HP0259 |
gene |
DNA |
|
| 137 |
1 |
1 |
1 |
9 |
HPY1593 |
Helicobacter pylori |
726 |
PCR_amplicon |
DNA |
Experimental |
|
|
|
|
|
|
|
NO INFORMATION |
| 154 |
1 |
1 |
1 |
10 |
HPY0218 |
Helicobacter pylori |
457 |
PCR_amplicon |
DNA |
Experimental |
|
HP0218 |
|
|
HP0218 |
gene |
DNA |
|
| 171 |
1 |
1 |
1 |
11 |
HPY0594 |
Helicobacter pylori |
162 |
PCR_amplicon |
DNA |
Experimental |
|
HP0594 |
|
|
HP0594 |
gene |
DNA |
|
| 188 |
1 |
1 |
1 |
12 |
HPY1505 |
Helicobacter pylori |
945 |
PCR_amplicon |
DNA |
Experimental |
|
HP1505 |
biosynthesis of cofactors, prosthetic groups and carriers, Riboflavin |
ribD |
HP1505 |
gene |
DNA |
|
| 205 |
1 |
1 |
1 |
13 |
HPY1675 |
Helicobacter pylori |
3709 |
PCR_amplicon |
DNA |
Experimental |
|
|
|
|
|
|
|
NO INFORMATION |
| 222 |
1 |
1 |
1 |
14 |
EMPTY |
Not Applicable |
|
unknown_sequence |
unknown_polymer |
Control |
control_negative |
|
|
|
|
|
|
CONTROL |
| 239 |
1 |
1 |
1 |
15 |
HPY1129 |
Helicobacter pylori |
307 |
PCR_amplicon |
DNA |
Experimental |
|
HP1129 |
Transport and binding proteins,Other |
exbD |
HP1129 |
gene |
DNA |
|
| 2 |
1 |
1 |
2 |
1 |
HPY1166 |
Helicobacter pylori |
1591 |
PCR_amplicon |
DNA |
Experimental |
|
HP1166 |
energy metabolism, Glycolysis/gluconeogenesis |
pgi |
HP1166 |
gene |
DNA |
|
| 19 |
1 |
1 |
2 |
2 |
HPY0074 |
Helicobacter pylori |
424 |
PCR_amplicon |
DNA |
Experimental |
|
HP0074 |
Cellular Processes, Protein and peptide secretion |
lspA |
HP0074 |
gene |
DNA |
|
| 36 |
1 |
1 |
2 |
3 |
HPY0929 |
Helicobacter pylori |
825 |
PCR_amplicon |
DNA |
Experimental |
|
HP0929 |
biosynthesis of cofactors, prosthetic groups and carriers, Menaquinone and ubiquinone |
ispA |
HP0929 |
gene |
DNA |
|
| 53 |
1 |
1 |
2 |
4 |
HPY1020 |
Helicobacter pylori |
1172 |
PCR_amplicon |
DNA |
Experimental |
|
HP1020 |
Hypothetical, General |
|
HP1020 |
gene |
DNA |
|
| 70 |
1 |
1 |
2 |
5 |
HPY0945 |
Helicobacter pylori |
257 |
PCR_amplicon |
DNA |
Experimental |
|
HP0945 |
|
|
HP0945 |
gene |
DNA |
|
Total number of rows: 4032
Table truncated, full table size 504 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL9754_Print_1538.adf.gz |
123.4 Kb |
(ftp)(http) |
ADF |
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