NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL9759 Query DataSets for GPL9759
Status Public on Nov 22, 2010
Title QIMR/Agilent-023536 Schistosoma japonicum 44k array_New 2009 Sj
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Schistosoma japonicum
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16023536 or 2523536.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Gobert G, McManus D
Submission date Dec 07, 2009
Last update date Nov 22, 2010
Contact name Geoffrey Gobert
E-mail(s) geoffG@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Samples (32) GSM631997, GSM631998, GSM631999, GSM632000, GSM961041, GSM961042 
Series (3)
GSE25728 Towards an understanding of the mechanism of hypoevolution of Schistosoma japonicum schistosomula from Microtus fortis
GSE39329 Comparative genomic hybridization of Schistosoma japonicum Chinese and Philippine isolates
GSE41149 Transcriptional Responses of Schistosoma japonicum Exposed in vivo to Sub-Lethal Dosages of Praziquantel

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SEQUENCE oligonucleotide sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE GB_ACC ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 Contig11241 Contig11241 FALSE SJCHGC13204 unmapped Genome polyprotein OS=Dengue virus type 1 (strain Nauru/West Pac/1974) PE=3 SV=2 CACTTTAGTATGCAGCATTCAATCACTAAATGAATTGGGAAAATAGACAAAAGCTCCTAC
13 266 146 Contig05113 Contig05113 FALSE SJCHGC06655 unmapped 60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1 AAGCTAGAGGTCGTCGAGCTAGTCGAGCTTACAAAAAGTAAAGTTGTACATTAAGAATAT
14 266 144 Contig13006 Contig13006 FALSE SJCHGC15089 unmapped UPF0118 membrane protein RP630 OS=Rickettsia prowazekii GN=RP630 PE=3 SV=1 CATGATAATCACTTTTTTGTGTGTATCTGTTCCATCGGTTCCTACTCATTCGTGTCCTTC
15 266 142 Contig11519 Contig11519 FALSE SJCHGC13500 unmapped Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1 GATCCAGTTTTCAATTGCAGTTCTATTTCCATAAATTTGTTGGGTCAATGTGTTTGCATC
16 266 140 Contig10211 Contig10211 FALSE SJCHGC12096 unmapped Sideroflexin-5 OS=Mus musculus GN=Sfxn5 PE=1 SV=2 ACATCACAGATGTGAGGTTGCATCTGAATATGAAACTGATGGTGACATCATTGAAAACCT
17 266 138 Contig10645 Contig10645 FALSE SJCHGC12565 unmapped Segregation and condensation protein B OS=Clostridium perfringens (strain SM101 / Type A) GN=scpB PE=3 SV=1 GTTGAGGTACTTATATAAAAGAGCAGTGGAATATGCATTTGGTAAAACATGAAAGCAAGC
18 266 136 Contig00758 Contig00758 FALSE SJCHGC02008 unmapped Antigen 10-3 OS=Schistosoma mansoni PE=2 SV=1 GTACACTATTACGACTATTCAGTATGAAGATTTCTTCAAGTATGCAGAGAAAGCATGACA
19 266 134 Contig01423 Contig01423 FALSE SJCHGC02768 unmapped 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 ATAGAGGACTAAGGTATTGAGTTACTGTTAAAATGCCCACCTGTATCTTGGCTTTTTATA
20 266 132 Contig11553 Contig11553 FALSE SJCHGC13537 unmapped NIL CCTCGACTGTGCTAGCGTTTAATGTTAAGAATCACATGTCAACTAATATGTGATAAGCAC

Total number of rows: 45220

Table truncated, full table size 8398 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap