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Platform GPL9784 Query DataSets for GPL9784
Status Public on Dec 17, 2009
Title NimbleGen Xenopus tropicalis Whole Genome Tiling v1.0 slide 5c
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Xenopus tropicalis
Manufacturer NimbleGen
Manufacture protocol According to manufacturer's protocol (Roche Nimblegen)
 
Description JGI 4.1 (UCSC xenTro2)
 
Submission date Dec 10, 2009
Last update date Dec 17, 2009
Contact name Gert Jan Veenstra
E-mail(s) g.veenstra@science.ru.nl
Phone +31 24 3610541
Organization name Radboud University
Department Molecular Developmental Biology
Street address Geert Grooteplein 28
City Nijmegen
ZIP/Postal code 6525 GA
Country Netherlands
 
Samples (1) GSM482781
Series (1)
GSE19413 ChIP-chip Designs to Interrogate the Xenopus Embryo Genome for Transcription Factor Binding and Epigenetic Regulation

Data table header descriptions
ID
SEQUENCE Sequence of oligo
Chromosome Chromosomal location
RANGE_START Chromosomal start position of oligo
LENGTH Oligo length
RANGE_END Chromosomal end position of oligo

Data table
ID SEQUENCE Chromosome RANGE_START LENGTH RANGE_END
SCAFFOLD_10435FS000010049 CAAAATTTCCATGGCCAAAAAAAAGTAGCAAAGAACAATCTGGAATGTAATAAA scaffold_10435 10049 54 10102
SCAFFOLD_10435FS000001421 CTGAAAGTGCTCATTAATTAGGGTCTTACTTGGATGTCTACATTCTTGGGTCCACAA scaffold_10435 1421 57 1477
SCAFFOLD_10435FS000001521 AATATGGTAAAGTATGCTGGGATTTGTAATATAGATTGAAAGCTCAATGGGGCAGGGAC scaffold_10435 1521 59 1579
SCAFFOLD_10435FS000001761 CATACATTAAGGGGCCCAATCATCAATGTATGATTGAGTCTGAATAATATAAAATGGTATT scaffold_10435 1761 61 1821
SCAFFOLD_10435FS000002041 GGATACAAAAATTTCGGAACACAATATTTTCGCACGACCATGATGTGAAAATGACAGATC scaffold_10435 2041 60 2100
SCAFFOLD_10435FS000002161 CAGCCCCTAAGTATGGTTGTAAAAAAATGCTTTTTTTCCCATCAGTTTAGGC scaffold_10435 2161 52 2212
SCAFFOLD_10435FS000002263 CTGAGACAAGAAGAGCTTAATATTAGTAGAGATTCTTTAAAAATGGCACATAACAATGCAA scaffold_10435 2263 61 2323
SCAFFOLD_10435FS000002363 GGCAATCATCATAACAGATGGTGTTGATACTGATAAATGTTGATAAAAAGTAGTGGGTGATAC scaffold_10435 2363 63 2425
SCAFFOLD_10435FS000002463 CTAAAAGAGTCAAAGAGCTAAGTGTCCTTGCGAAAAATGTTAGCAATATATTATTCT scaffold_10435 2463 57 2519
SCAFFOLD_10435FS000002563 TTTATTAACCATTGTCAGTCTTCAGATACTACTATTGTTATAATGATATTCTGACTTAAGCA scaffold_10435 2563 62 2624
SCAFFOLD_10435FS000003143 ATCATTAATAATCATATTAACTAAAAGTGTGAGTTGTGATGGTAACAGAACACCTAAA scaffold_10435 3143 58 3200
SCAFFOLD_10435FS000003243 TGGTCACTTTGAGGGCATCGTTATACCTTTAGTCTGAAGAGTTTCTTCTATAGTTAA scaffold_10435 3243 57 3299
SCAFFOLD_10435FS000003343 TCTATTAAAACATAAAGGGAAAACACATGTCTTTGAAACCACTTAACATACTAC scaffold_10435 3343 54 3396
SCAFFOLD_10435FS000004652 TACTCTTCCTGCCCTACTCAGCCTGTGTGTCCCATACAGTGCCTGCCCTA scaffold_10435 4652 50 4701
SCAFFOLD_10435FS000004772 GAACCTGGTGGGGGCTTGTTCTGGGAGTTTATTAGAATTTGGAAATAGTTAT scaffold_10435 4772 52 4823
SCAFFOLD_10435FS000004932 TTCTTTCACATATTAATGAATGAGGTGATATTCCTGCAATGAGCATCAACCATATGGATTTTTGG scaffold_10435 4932 65 4996
SCAFFOLD_10435FS000005098 CTATCCATTATTGGCACTCCACCACATAGGCCAAAAAAATTTCGTCCCAC scaffold_10435 5098 50 5147
SCAFFOLD_10435FS000005198 AGTCCAACTATACCACAAGCATAAGGGGTTTTCTCCAAGGGATGTAAGGAAAT scaffold_10435 5198 53 5250
SCAFFOLD_10435FS000005424 ATGTAACAATAACTAGAAAACCGTAGCTTTACAGAGCAATCATTTTTGGCTATGGG scaffold_10435 5424 56 5479
SCAFFOLD_10435FS000005504 GCATCCTAAGCCTAAATTCCAAAACCAAAAATCCTGTAACATTAGCTTTAGCCCA scaffold_10435 5504 55 5558

Total number of rows: 191446

Table truncated, full table size 20353 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9784_2007-10-09_XT41_GV_ChIP15.ndf.gz 12.1 Mb (ftp)(http) NDF
GPL9784_2007-10-09_XT41_GV_ChIP15.pos.gz 1.7 Mb (ftp)(http) POS

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