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Status
Public on Mar 03, 2010
Title
NimbleGen Bos taurus Btau31 WG CGH
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Bos taurus Manufacturer
NimbleGen Systems, Inc.
Manufacture protocol
Maskless array synthesis was used to construct isothermal arrays. Probes were selected with a median probe spacing of 5.8 kb. Probes were synthesized using an isothermal format (Tm = 76°C) and varied in length from 50 to 75 bp.
Contributor(s)
Liu GE , Keele JW Submission date
Jan 08, 2010
Last update date
Mar 03, 2010
Contact name
George Liu
E-mail(s)
George.Liu@ars.usda.gov Phone
1-301-504-9843
Fax
1-301-504-8414
Organization name
United States Department of Agriculture
Lab
Bovine Functional Genomics Lab.
Street address
10300 Baltimore Ave
City
Beltsville
State/province
MD
ZIP/Postal code
20705-2350
Country
USA
Samples (48)
GSM495814 , GSM495816 , GSM495818 , GSM495819 , GSM495877 , GSM495878
GSM495909 ,
GSM495910 ,
GSM495911 ,
GSM495912 ,
GSM495913 ,
GSM495914 ,
GSM495915 ,
GSM495916 ,
GSM495917 ,
GSM495933 ,
GSM495945 ,
GSM495946 ,
GSM495947 ,
GSM495956 ,
GSM495957 ,
GSM495958 ,
GSM495959 ,
GSM495960 ,
GSM495961 ,
GSM495962 ,
GSM495963 ,
GSM495964 ,
GSM495971 ,
GSM495972 ,
GSM495973 ,
GSM495974 ,
GSM495975 ,
GSM495976 ,
GSM495977 ,
GSM496086 ,
GSM496087 ,
GSM496088 ,
GSM496127 ,
GSM496136 ,
GSM496143 ,
GSM496144 ,
GSM496183 ,
GSM496237 ,
GSM496299 ,
GSM537897 ,
GSM537898 ,
GSM537899 Series (2)
GSE19866 Analysis of copy number variations among diverse cattle breeds
GSE21538 Initial analysis of copy number variations in cattle selected for resistance or susceptibility to intestinal nematodes
Data table header descriptions ID CHROMOSOME chromosome location
DESIGN_REGION The designed region in which the probes were requested.
RANGE_GB GenBank Accession number
RANGE_START The start position of the probe
RANGE_END The end position of the probe
PROBE_LENGTH The length of probe
SEQUENCE The sequence of probe
Data table ID CHROMOSOME DESIGN_REGION RANGE_GB RANGE_START RANGE_END PROBE_LENGTH SEQUENCE CHR01P000040406
chr1
chr1:1-146199855
NC_007299.3 40406
40460
55
GAAAGCACTACACTGGAGTTTATGAAAACCGGGATAGGCAATTTGACTCTTATTT
CHR01P000063263
chr1
chr1:1-146199855
NC_007299.3 63263
63319
57
AGACACCATCAAACCAGCGGGTGAACTCTGAATTTCTTACTTTTATCAACTCTTTCA
CHR01P000074949
chr1
chr1:1-146199855
NC_007299.3 74949
74998
50
TAATGCTGGCTTTCCGTGGGGAAGAATGGAATGGTAGCCTTATGATGAGA
CHR01P000080520
chr1
chr1:1-146199855
NC_007299.3 80520
80581
62
AGATAGTAGCAGTCAAGCGCTCTCTGTAGTTAATTTTCCACATAGTAGTATTGATCCATACC
CHR01P000086327
chr1
chr1:1-146199855
NC_007299.3 86327
86390
64
TGTGGCATTTAGGAAATCATACATATTGCTAGGAAGATAGTACAAATACAAACAGAATCATACA
CHR01P000092021
chr1
chr1:1-146199855
NC_007299.3 92021
92076
56
TCCAAATAGTCTTTAGAAAATTACATTATACTTGACCGGACAGAACATTGAGTGTT
CHR01P000097923
chr1
chr1:1-146199855
NC_007299.3 97923
97982
60
TAGTCCACACTGTTGGGAAATTATGTGCAAGTGTTTCAGAGACTCCAATGTACCTTTCAA
CHR01P000103665
chr1
chr1:1-146199855
NC_007299.3 103665
103714
50
CATGTCATTCTACAGCCTTTCAAGCTGCCCAAATTGCGATGAGTTTGCAG
CHR01P000126700
chr1
chr1:1-146199855
NC_007299.3 126700
126749
50
CCAAGCACTTGGATAACCCAGATTCGTAGGCCCGCCTTTCGAAATGGAAC
CHR01P000132450
chr1
chr1:1-146199855
NC_007299.3 132450
132499
50
GACCATACTATCCTCGGCTCTGCCCGGTGTTGCACCAAACTGTTCCTTGA
CHR01P000138210
chr1
chr1:1-146199855
NC_007299.3 138210
138259
50
GACCACAAGTCATCCCAGCCATGGCCTGTGGTGACAATGGTGGAATATGA
CHR01P000143977
chr1
chr1:1-146199855
NC_007299.3 143977
144026
50
GAAGTTGCATGTCCCAGTTACCAACTGTCCAGGAAAACATCACTCCACAT
CHR01P000155455
chr1
chr1:1-146199855
NC_007299.3 155455
155508
54
AAACTGTTTCCAAGCTGTAATGAGAGACTGGTATCCTATAGTCCAGAAACCAGA
CHR01P000161137
chr1
chr1:1-146199855
NC_007299.3 161137
161191
55
TCTTACTTAGCATAAGGCCCTCCAGGTTTATCCAAATTGTTACAAACGGCAGGAT
CHR01P000172553
chr1
chr1:1-146199855
NC_007299.3 172553
172608
56
CTTTAATTTCCATTGTGACACCCCTCTGGAAGGCTCCCAACCACATTTGTAAATGA
CHR01P000178339
chr1
chr1:1-146199855
NC_007299.3 178339
178395
57
TTAACACCACACCAGGTGACTTCTCTATGACTTTACACCTGTGAACGTAAAACTGAA
CHR01P000184204
chr1
chr1:1-146199855
NC_007299.3 184204
184263
60
GAGCATGCACGCGTGGTTTTGACTATTGACTCCTCTATGTTCAATTTATTATGTTTAAAA
CHR01P000195661
chr1
chr1:1-146199855
NC_007299.3 195661
195723
63
CAAGAACCATTCTCTGATAGCAAAGAGCATGGAAATATACTAACTGCACCTCAACAACAATAA
CHR01P000207184
chr1
chr1:1-146199855
NC_007299.3 207184
207233
50
TGGAATTTAGACCAGATCTACCTGGTGTCTGGAGCTATAGAGGAGACTGT
CHR01P000218587
chr1
chr1:1-146199855
NC_007299.3 218587
218646
60
GTTCAATACCTTATTGCGCCTATATCTGACAATATACGGTAAGCATTTAACCACTTGCCA
385048 47330 Kbytes .Supplementary data files not provided
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