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Platform GPL9866 Query DataSets for GPL9866
Status Public on Mar 03, 2010
Title NimbleGen Bos taurus Btau40 WG CGH
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Bos taurus
Manufacturer NimbleGen Systems, Inc.
Manufacture protocol Maskless array synthesis was used to construct isothermal arrays. Probes were selected with a median probe spacing of 5.8 kb. Probes were synthesized using an isothermal format (Tm = 76°C) and varied in length from 50 to 75 bp.
 
 
Contributor(s) Liu GE, Keele JW
Submission date Jan 08, 2010
Last update date Mar 03, 2010
Contact name George Liu
E-mail(s) George.Liu@ars.usda.gov
Phone 1-301-504-9843
Fax 1-301-504-8414
Organization name United States Department of Agriculture
Lab Bovine Functional Genomics Lab.
Street address 10300 Baltimore Ave
City Beltsville
State/province MD
ZIP/Postal code 20705-2350
Country USA
 
Samples (45) GSM495820, GSM495821, GSM495834, GSM495863, GSM495864, GSM495865 
Series (1)
GSE19866 Analysis of copy number variations among diverse cattle breeds

Data table header descriptions
ID
CHROMOSOME chromosome location
DESIGN_REGION The designed region in which the probes were requested.
RANGE_GB GenBank Accession number
RANGE_START The start position of the probe
RANGE_END The end position of the probe
PROBE_LENGTH The length of probe
SEQUENCE The sequence of probe

Data table
ID CHROMOSOME DESIGN_REGION RANGE_GB RANGE_START RANGE_END PROBE_LENGTH SEQUENCE
CHR01FS000012807 chr1 chr1:1-161106243 NC_007299.3 12807 12861 55 TTCACAAAGGGAATAAAAGATGGAGGTGGTAAAGAATGGTATATGGGAGGCTTTG
CHR01FS000038767 chr1 chr1:1-161106243 NC_007299.3 38767 38826 60 GTCCAGTGAAAATAGCCTAGGAATATACCTAACACATAATTGGTCATCTCTTTATGTATG
CHR01FS000051303 chr1 chr1:1-161106243 NC_007299.3 51303 51361 59 CCTTTCCACTACAGAGCAAATCAGTTGTCTCTGGAAAACAATGTACCTGTCTATAAACA
CHR01FS000058086 chr1 chr1:1-161106243 NC_007299.3 58086 58146 61 GTGTCTTCGCATGATTCAGCAACAACCTTTCAAAGGGATTTCAGACTGTATATATTTTTGA
CHR01FS000064228 chr1 chr1:1-161106243 NC_007299.3 64228 64289 62 GATGTTATAAATGCTCAACTACCCACCTCTCTATGTTATCTCTGTACTTCCTTGTCATTGCT
CHR01FS000077100 chr1 chr1:1-161106243 NC_007299.3 77100 77149 50 AGATAATGCTGTTGGCTTTGCCATGGAAAACTTGGAACGTGGCAAAGCCT
CHR01FS000089736 chr1 chr1:1-161106243 NC_007299.3 89736 89792 57 TTTTTCAATGGTATGTTACTAACCAATACCTTCTTATCCTCATAAACTGTCTGTGAT
CHR01FS000096405 chr1 chr1:1-161106243 NC_007299.3 96405 96454 50 CAACTGCACTGAGTGTAGAGCATACGCTACTGTATTGAGTATGGGCAATC
CHR01FS000102776 chr1 chr1:1-161106243 NC_007299.3 102776 102834 59 AAGAGTCTGAAGACTCGGAAGATACTCACCGATACACTATCAGTAGTTATCTAAGTGTA
CHR01FS000115620 chr1 chr1:1-161106243 NC_007299.3 115620 115669 50 CGAATCTTATAAGAAGCCACACCAGAGGCGGAATAGAGGTCCATGCAGAA
CHR01FS000122058 chr1 chr1:1-161106243 NC_007299.3 122058 122107 50 GTTGCCAAGGTCCGCTGGATTATCGAGAAAGCAAGAAAGTGCCAGAAAAA
CHR01FS000128204 chr1 chr1:1-161106243 NC_007299.3 128204 128253 50 TGAACTCCTCCAAGGTCCTCTGCAGGAAGCCTGATGCCCTCATGTACTTT
CHR01FS000134743 chr1 chr1:1-161106243 NC_007299.3 134743 134792 50 TCAATCTCCTATTTCCTTCTAACGGCGCTTGGTTCAGTAGACTGAACCAA
CHR01FS000141116 chr1 chr1:1-161106243 NC_007299.3 141116 141174 59 GTTTCTTAAACTGGACAGCAACATACGAAAGGATGAAACCAGATCACTATTACATTACA
CHR01FS000147463 chr1 chr1:1-161106243 NC_007299.3 147463 147514 52 AAAAGCAGCTTTTACGTTGCCCTACATCAAGACTCAGCTTTCACACAGATGA
CHR01FS000153620 chr1 chr1:1-161106243 NC_007299.3 153620 153678 59 AACTGTGTTTACTAGGCTGTCATGAAGGCTAGGTGAATGGTTAGAGGAACATTGTAGTA
CHR01FS000160016 chr1 chr1:1-161106243 NC_007299.3 160016 160067 52 AACAAGACTGAGAAGTTTCCTCCCATTATCAGAGCTTTGAGGTGGAACAACA
CHR01FS000166529 chr1 chr1:1-161106243 NC_007299.3 166529 166578 50 GAAAGGAGACTCCGTGTCCATCCACTTCCCAGAATGCCTCTCGCTAGCAT
CHR01FS000173024 chr1 chr1:1-161106243 NC_007299.3 173024 173073 50 CTGAACAAGGCGTCTGTGTGAATGGAACCCATAAACCGTGGACACACAAA
CHR01FS000179260 chr1 chr1:1-161106243 NC_007299.3 179260 179309 50 AGAAACACTAACAGCAAGCTCTTATTTAGTGCTAACCGTCTGCTGCTGCT

Total number of rows: 384025

Table truncated, full table size 47825 Kbytes.




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