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Status
Public on Mar 03, 2010
Title
NimbleGen Bos taurus Btau40 WG CGH
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Bos taurus Manufacturer
NimbleGen Systems, Inc.
Manufacture protocol
Maskless array synthesis was used to construct isothermal arrays. Probes were selected with a median probe spacing of 5.8 kb. Probes were synthesized using an isothermal format (Tm = 76°C) and varied in length from 50 to 75 bp.
Contributor(s)
Liu GE , Keele JW Submission date
Jan 08, 2010
Last update date
Mar 03, 2010
Contact name
George Liu
E-mail(s)
George.Liu@ars.usda.gov Phone
1-301-504-9843
Fax
1-301-504-8414
Organization name
United States Department of Agriculture
Lab
Bovine Functional Genomics Lab.
Street address
10300 Baltimore Ave
City
Beltsville
State/province
MD
ZIP/Postal code
20705-2350
Country
USA
Samples (45)
GSM495820 , GSM495821 , GSM495834 , GSM495863 , GSM495864 , GSM495865
GSM495866 ,
GSM495918 ,
GSM495923 ,
GSM495928 ,
GSM495929 ,
GSM495930 ,
GSM495931 ,
GSM495932 ,
GSM495936 ,
GSM495939 ,
GSM495940 ,
GSM495941 ,
GSM495942 ,
GSM495943 ,
GSM495944 ,
GSM495965 ,
GSM495966 ,
GSM495967 ,
GSM495968 ,
GSM495969 ,
GSM495970 ,
GSM495978 ,
GSM495983 ,
GSM496013 ,
GSM496014 ,
GSM496058 ,
GSM496085 ,
GSM496137 ,
GSM496138 ,
GSM496139 ,
GSM496140 ,
GSM496141 ,
GSM496142 ,
GSM496363 ,
GSM496380 ,
GSM496381 ,
GSM496382 ,
GSM496383 ,
GSM496384 Series (1)
GSE19866 Analysis of copy number variations among diverse cattle breeds
Data table header descriptions ID CHROMOSOME chromosome location
DESIGN_REGION The designed region in which the probes were requested.
RANGE_GB GenBank Accession number
RANGE_START The start position of the probe
RANGE_END The end position of the probe
PROBE_LENGTH The length of probe
SEQUENCE The sequence of probe
Data table ID CHROMOSOME DESIGN_REGION RANGE_GB RANGE_START RANGE_END PROBE_LENGTH SEQUENCE CHR01FS000012807
chr1
chr1:1-161106243
NC_007299.3 12807
12861
55
TTCACAAAGGGAATAAAAGATGGAGGTGGTAAAGAATGGTATATGGGAGGCTTTG
CHR01FS000038767
chr1
chr1:1-161106243
NC_007299.3 38767
38826
60
GTCCAGTGAAAATAGCCTAGGAATATACCTAACACATAATTGGTCATCTCTTTATGTATG
CHR01FS000051303
chr1
chr1:1-161106243
NC_007299.3 51303
51361
59
CCTTTCCACTACAGAGCAAATCAGTTGTCTCTGGAAAACAATGTACCTGTCTATAAACA
CHR01FS000058086
chr1
chr1:1-161106243
NC_007299.3 58086
58146
61
GTGTCTTCGCATGATTCAGCAACAACCTTTCAAAGGGATTTCAGACTGTATATATTTTTGA
CHR01FS000064228
chr1
chr1:1-161106243
NC_007299.3 64228
64289
62
GATGTTATAAATGCTCAACTACCCACCTCTCTATGTTATCTCTGTACTTCCTTGTCATTGCT
CHR01FS000077100
chr1
chr1:1-161106243
NC_007299.3 77100
77149
50
AGATAATGCTGTTGGCTTTGCCATGGAAAACTTGGAACGTGGCAAAGCCT
CHR01FS000089736
chr1
chr1:1-161106243
NC_007299.3 89736
89792
57
TTTTTCAATGGTATGTTACTAACCAATACCTTCTTATCCTCATAAACTGTCTGTGAT
CHR01FS000096405
chr1
chr1:1-161106243
NC_007299.3 96405
96454
50
CAACTGCACTGAGTGTAGAGCATACGCTACTGTATTGAGTATGGGCAATC
CHR01FS000102776
chr1
chr1:1-161106243
NC_007299.3 102776
102834
59
AAGAGTCTGAAGACTCGGAAGATACTCACCGATACACTATCAGTAGTTATCTAAGTGTA
CHR01FS000115620
chr1
chr1:1-161106243
NC_007299.3 115620
115669
50
CGAATCTTATAAGAAGCCACACCAGAGGCGGAATAGAGGTCCATGCAGAA
CHR01FS000122058
chr1
chr1:1-161106243
NC_007299.3 122058
122107
50
GTTGCCAAGGTCCGCTGGATTATCGAGAAAGCAAGAAAGTGCCAGAAAAA
CHR01FS000128204
chr1
chr1:1-161106243
NC_007299.3 128204
128253
50
TGAACTCCTCCAAGGTCCTCTGCAGGAAGCCTGATGCCCTCATGTACTTT
CHR01FS000134743
chr1
chr1:1-161106243
NC_007299.3 134743
134792
50
TCAATCTCCTATTTCCTTCTAACGGCGCTTGGTTCAGTAGACTGAACCAA
CHR01FS000141116
chr1
chr1:1-161106243
NC_007299.3 141116
141174
59
GTTTCTTAAACTGGACAGCAACATACGAAAGGATGAAACCAGATCACTATTACATTACA
CHR01FS000147463
chr1
chr1:1-161106243
NC_007299.3 147463
147514
52
AAAAGCAGCTTTTACGTTGCCCTACATCAAGACTCAGCTTTCACACAGATGA
CHR01FS000153620
chr1
chr1:1-161106243
NC_007299.3 153620
153678
59
AACTGTGTTTACTAGGCTGTCATGAAGGCTAGGTGAATGGTTAGAGGAACATTGTAGTA
CHR01FS000160016
chr1
chr1:1-161106243
NC_007299.3 160016
160067
52
AACAAGACTGAGAAGTTTCCTCCCATTATCAGAGCTTTGAGGTGGAACAACA
CHR01FS000166529
chr1
chr1:1-161106243
NC_007299.3 166529
166578
50
GAAAGGAGACTCCGTGTCCATCCACTTCCCAGAATGCCTCTCGCTAGCAT
CHR01FS000173024
chr1
chr1:1-161106243
NC_007299.3 173024
173073
50
CTGAACAAGGCGTCTGTGTGAATGGAACCCATAAACCGTGGACACACAAA
CHR01FS000179260
chr1
chr1:1-161106243
NC_007299.3 179260
179309
50
AGAAACACTAACAGCAAGCTCTTATTTAGTGCTAACCGTCTGCTGCTGCT
384025 47825 Kbytes .Supplementary data files not provided
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