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Status
Public on Mar 01, 2010
Title
Vibrio salmonicida 5.5K V1.0.1 AROS
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Aliivibrio salmonicida Manufacturer
Operon Biotechnologies
Manufacture protocol
see manufacturer's web site at www.operon.com
Submission date
Jan 28, 2010
Last update date
Mar 01, 2010
Contact name
Erik Hjerde
E-mail(s)
erik.hjerde@uit.no Phone
+47 77646263
Organization name
University of Tromsø
Department
Department of chemistry
Street address
Breivika
City
Tromsø
ZIP/Postal code
9037
Country
Norway
Samples (44)
GSM501849 , GSM501850 , GSM501851 , GSM501852 , GSM501853 , GSM501854
GSM501855 ,
GSM501856 ,
GSM501857 ,
GSM627965 ,
GSM627966 ,
GSM627967 ,
GSM627968 ,
GSM627969 ,
GSM627970 ,
GSM627971 ,
GSM627972 ,
GSM627973 ,
GSM627974 ,
GSM627975 ,
GSM627976 ,
GSM627977 ,
GSM627978 ,
GSM627979 ,
GSM627980 ,
GSM627981 ,
GSM627982 ,
GSM694340 ,
GSM694341 ,
GSM694342 ,
GSM1054621 ,
GSM1054622 ,
GSM1054623 ,
GSM1054624 ,
GSM1054625 ,
GSM1054626 ,
GSM1054627 ,
GSM1054628 ,
GSM1399311 ,
GSM1399312 ,
GSM1399313 ,
GSM1399314 ,
GSM1399315 ,
GSM1399316 Series (9)
GSE20082 Global responses of Aliivibrio salmonicida to hydrogen peroxide
GSE25545 Prediction, microarray and Northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida (LB medium vs. iron-limited condition)
GSE25546 Prediction, microarray and Northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida (wild type vs. LitR mutant)
GSE25558 Prediction, microarray and Northern blot analyses identify new intergenic small RNAs in Aliivibrio salmonicida
GSE28087 Expression profiling of a spf deletion mutant suggests biological roles and mRNA targets for Spot 42 in the fish pathogen Aliivibrio salmonicida
GSE42994 V. salmonicida wild type strain LFI1238 and isogenic DlitR mutant grown in suspension in SWT medium
GSE42995 V. salmonicida wild type strain LFI1238 and isogenic DlitR mutant grown as statical biofilm in SWT medium
GSE42996 The syp locus of Vibrio salmonicida is necessary for biofilm formation and is regulated by the quorum sensing transcriptional regulator LitR
GSE57996 The immediate global responses of Aliivibrio salmonicida to iron limitations
Data table header descriptions ID oligo nampe LOCUS_TAG Unique gene identifier
COORDINATES Oligo coordinates on microarray
SEQUENCE Oligo sequences (5' to 3')
DESCRIPTION Gene description
GENOME_ACC ORF SPOT_ID
Data table ID oligo nampe LOCUS_TAG COORDINATES SEQUENCE DESCRIPTION GENOME_ACC ORF SPOT_ID 1
null
--null
2
EMPTY
01: A-01
--EMPTY
3
EMPTY
01: A-02
--EMPTY
4
Visa10000001
VSAL_II0651
01: A-03
AAACAGTTATATAACAGTGCGAATAAGTGCAGTGGCCCATGGCCGGTTAGCCCATTAGTAGGTGAACCTT
"membrane associated signal transduction protein, histidine kinase"
FM178380 VSAL_II0651 5
Visa10000026
VSAL_I4088s
01: A-04
GCTAAATTTTGGCTGCATCATGTAGGTAACCTAACAAGGCATTTAAGACAGATTCGCAACACTCGGCGTT
VSsrna89
FM178379 VSAL_I4088s 6
Visa10000095
VSAL_I1863
01: A-05
TTTGAATCAATAGGGCTACCTGCAGATAGGATCCGAGTGCATTCTTATGGTGAACGCCGTCCAATTGC
motY sodium-type flagellar protein MotY precursor
FM178379 VSAL_I1863 7
Visa10000119
VSAL_I0383
01: A-06
GTTAATGGACGCAAAGTTCCGGTAGCTGGTCGTGTTTCGATGGATATGCTAACGGTTGATTTAGGACCTG
alr alanine racemase
FM178379 VSAL_I0383 8
Visa10000002
VSAL_I0705
01: A-07
GAAGAACTACAAACTATTTTTGAAGCCGCACCGTTGAATGACTTTATGGGACTGAATTACTACCAACCAC
pbgA 6-phospho-beta-glucosidase
FM178379 VSAL_I0705 9
Visa10000120
VSAL_I1558
01: A-08
GAACAAGAACATACACGTAAGAAGTCTATAGATTTAGATTATAGAGTATGGGAAAAGTTGTCTCTTAGAG
conserved hypothetical protein
FM178379 VSAL_I1558 10
Visa10000096
VSAL_II0110
01: A-09
GATACAACAACCGGTGAAGTCATTGACCCAAATACGGTTAAAGACCAAAACTGGGCGAAGACAGACAATG
TonB dependent receptor
FM178380 VSAL_II0110 11
Visa10000027
VSAL_I1560
01: A-10
GTGTCACATAGTGTGCCTAACTACGTAATAGCAGATGCAGCAAGAATCATGCAGATCATATTTAACTTAG
"response regulator, histidine kinase"
FM178379 VSAL_I1560 12
Visa10000003
VSAL_I2252
01: A-11
GGTATTCTTTTAGGAGTTGGTGCAGCCAACTTTAGTTTCCTTCCAGAAGTTGTTTCTCATTTAATGGAAC
"ptsG PTS system, glucose-specific EIIBC component, glucose permease IIC component"
FM178379 VSAL_I2252 13
Visa10000121
VSAL_I1695
01: A-12
GATATTGCACCGGAGATGATTGTTAGAGCGACAGGCAGTATTACCGTTGGCGGGTTTATTGAATCTG
conserved hypothetical protein
FM178379 VSAL_I1695 14
VisaSC100003
01: A-13
GCTGCATCTGAACGAGTTAAAGAACCTGCATTCTACTGAGACCAGTACTTCCAGAAGATCGGTTGGTTAG
Sence stringency control 80% for ViSa10002110
--control
15
Visa10000028
VSAL_II2047s
01: A-14
AGTCGTTAAATACTTAATAATCTATAATGAAATGCGTCACATTTAAGTTTGGGAATGACGATACCAAATC
VSAsrna48
FM178380 VSAL_II2047s 16
Visa10000004
VSAL_I1591
01: A-15
TTAGGTCATTGCTGTGACAATATACTCAAGCTGAACATTTCTCCGAGTGCAGACGTTCTTCTATTTATTA
hypothetical protein
FM178379 VSAL_I1591 17
Visa10000122
VSAL_I1790
01: A-16
GTATCGACTTGCCGAGATCAAGCCAAAGTGGGCACCATCAGCTCAAACAGTCAGCA
restriction enzyme
FM178379 VSAL_I1790 18
Visa10000098
VSAL_I1838
01: A-17
GGTTCTGGCCCTGCTGGATATACAGCAGCCGTTTATGCCGCTCGTGCTAATCTAAAC
trxB thioredoxin reductase
FM178379 VSAL_I1838 19
Visa10000029
VSAL_I0067
01: A-18
TACACTCATACTCTCACAAATAAACGCACTACTCTGGAAGTAGAAAACACGACGGCTGAGGATAAGCGTG
putative hemolysin/hemagglutinin-like protein (fragment)
FM178379 VSAL_I0067 20
Visa10000005
VSAL_I2756
01: A-19
AAATTACATGGTTCATTAAGAGGGGTGGTGGATGACACATTGCAACCTCTAGTAAATGTAAATCAA
argC N-acetyl-gamma-glutamyl-phosphate reductase
FM178379 VSAL_I2756
5473 801 Kbytes .Supplementary data files not provided
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