GEO help: Mouse over screen elements for information.
Status
Public on Apr 02, 2010
Title
Meyerowitz Lab Arabidopsis Operon Array Version 4
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Arabidopsis thaliana Manufacturer
Meyerowitz laboratory at the California Institute of Technology
Manufacture protocol
The oligonucleotides of the Arabidopsis Genome Oligo Set (Operon) were provided in 384-well plates. The dried DNA was resuspended in 15 ul of printing buffer (150 mM Na-phosphate pH 8.5) per well, resulting in an estimated DNA concentration of 40 uM. DNA was spotted onto poly-lysine coated glass slides with a MicroGrid II spotter (Biorobotics) using Microspot 10K quill pins (Biorobotics). After printing, the slides were processed and blocked following standard protocols.
Support
glass
Coating
polysine
Description
This microarray is based on the Arabidopsis Genome Oligo Set Version 1.0 and on the Arabidopsis Genome Oligo Set Version 1.0 Upgrade (Operon, Alameda, CA). These sets consist of a total of 30,194 oligonucleotides.
Web link
http://www.its.caltech.edu/~plantlab/microarrays.html Contributor(s)
Riechmann JL , Wellmer F , Meyerowitz EM Submission date
Jan 29, 2010
Last update date
Jun 14, 2013
Contact name
Jose Luis Riechmann
E-mail(s)
joseluis.riechmann@cragenomica.es Organization name
Center for Research in Agricultural Genomics
Street address
Campus UAB - Edifici CRAG
City
Bellaterra
State/province
Barcelona
ZIP/Postal code
08193
Country
Spain
Samples (41)
GSM506327 , GSM506328 , GSM506329 , GSM506330 , GSM506331 , GSM506332
GSM506333 ,
GSM506334 ,
GSM506335 ,
GSM506336 ,
GSM506337 ,
GSM506338 ,
GSM506339 ,
GSM506340 ,
GSM506341 ,
GSM506342 ,
GSM506343 ,
GSM506344 ,
GSM506345 ,
GSM506346 ,
GSM506347 ,
GSM506348 ,
GSM506349 ,
GSM506350 ,
GSM506351 ,
GSM506352 ,
GSM506353 ,
GSM506354 ,
GSM506355 ,
GSM506356 ,
GSM506357 ,
GSM506358 ,
GSM506359 ,
GSM506360 ,
GSM506361 ,
GSM506362 ,
GSM506363 ,
GSM506364 ,
GSM506365 ,
GSM506366 ,
GSM586811 Series (4)
GSE20182 Meyerowitz Lab Arabidopsis Operon Array v4 - 4200A scanner - AP1-GR ap1cal inflorescences - time series (hours)
GSE20183 Meyerowitz Lab Arabidopsis Operon Array v4 - 4000B scanner - AP1-GR ap1cal inflorescences - time series (hours)
GSE20184 Orchestration of floral initiation by APETALA1
GSE23777 Pilot Experiment for Cell-specific Translatome: AP1 Domain vs. Whole Flower
Data table header descriptions ID CLONE ID Identifier of the gene or sequence represented by a given array element
SEQUENCE_NAMES Standardized name and acronyms of the gene or sequence represented by a given array element
SEQUENCE_DESCRIPTION Description of gene or gene product represented by an element
SEQUENCE Probe sequence
CLONE_ID SPOT_ID
Data table ID CLONE ID SEQUENCE_NAMES SEQUENCE_DESCRIPTION SEQUENCE CLONE_ID SPOT_ID A000001_01
AT1G58360.1
T2, AAP1
AAP1 (AMINO ACID PERMEASE 1); amino acid transmembrane transporter AAP1,AMINO ACID PERMEASE 1,NAT2,NEUTRAL AMINO ACID TRANSPORTER 2
AAAGTGGGTAAGACGAGTATGACGGGCACAGCGGTTGGAGTAGATGTAACCGCAGCTCAAAAGATATGGA
AT1G58360 A000002_01
AT1G26110.1
AT1G26110.1
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45330.1); similar to hypothetical protein [Glycine max] (GB:BAB41197.1); contains domain PTHR13586 (PTHR13586)
CTGTTCCAGTTACATCCGAAGCCCAACCTCCAATACTGCCATTGCCTTCCTCTGCAAGACCAACTCAGAA
AT1G26110 A000003_01
AT4G04780.2
AT4G04780.2
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15690.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ71436.1); contains domain RNA POLYMERASE II HOLOENZYME COMPONENT SRB7 (PTHR13381); contains domain Q7ZTI5_BRARE_Q7ZTI5; (PD201143)
GCTAAAGCAAGTACAAGAGCTGTTTGGACAAGCTGCTGACAATTGCCTGAACATGAAGAAACCTGAATGA
AT4G04780 A000004_01
AT1G04140.1
AT1G04140.1
transducin family protein / WD-40 repeat family protein
AACTTGGCCGAGGTGCAGACCTATGCGTTAGAATGCTAGACAGGGAAGAATTTGGGTCTCAACCATTCTA
AT1G04140 A000005_01
AT1G13270.1
MAP1B, MAP1C
MAP1C (METHIONINE AMINOPEPTIDASE 1B); metalloexopeptidase MAP1B,METHIONINE AMINOPEPTIDASE 1B,MAP1C,METHIONINE AMINOPEPTIDASE 1B
TGGTCCTGAAGGCATTGCGAAAATGAGAGCTGCTTGCGAGCTTGCTGCTCGGGTTTTAAACTATGCTGGA
AT1G13270 A000006_01
AT1G09640.1
AT1G09640.1
elongation factor 1B-gamma, putative / eEF-1B gamma, putative
GATCTATGCAAGTATCTTGAGGTGGTTCGGCCCAAGAATGGGCTTTATGCCATACAGTGCTCCGGCTGAA
AT1G09640 A000007_01
AT1G33560.1
ADR1
ADR1 (ACTIVATED DISEASE RESISTANCE 1) ADR1,ACTIVATED DISEASE RESISTANCE 1
TTCTCTTCGGACAACTACGTCTTGCCACCATTTATTGGTAAGATGAGTAGACTCAGGGTGCTCGTGATTA
AT1G33560 A000008_01
AT1G17615.1
AT1G17615.1
disease resistance protein (TIR-NBS class), putative
CTTTAGGGAAAGAGATCTTAATGTCGGTTCCGAGTTGTCTTCACCTATATCCGGGACTGAATCTTCTTGA
AT1G17615 A000009_01
A000009_01
A000009_01
Oligo not annotated using AGI transcripts file( TAIR8_cdna_20080412)
AAGCAAGTGCTTTGTGGAAAGCTTCTCAAGTTCCTGTTCGCCAAGAAACTGACACGTGTGACTCCACTGA
A000009_01
A000010_01
AT1G02450.1
NIMIN1, NIMIN-1
NIMIN-1/NIMIN1; protein binding NIMIN-1,n/a,NIMIN1,NIM1-INTERACTING 1
AAAATTCTGGCGTCGTGAGGAGGAAATCTAACGGCGGAGAAAGGTCCGGTATAGTAGTTCCGGCGTTTCA
AT1G02450 A000011_01
AT1G17665.1
AT1G17665.1
similar to CA-responsive protein [Brassica oleracea] (GB:ABB83615.1)
AAACCCATGAAAATGAACCGACCCATTTGACGAATTCGCGACTCTATGAGTTACTGCTCTCCGATAAGAA
AT1G17665 A000012_01
AT1G54610.3
AT1G54610.3
protein kinase family protein
TCCAGACGTGGTCAGGTCCTCTGGGTCATCCAATCACAGGCGTTTCAAGAAAGAAGAAAGATAACACCAA
AT1G54610 A000013_01
AT1G33980.2
ATUPF3, UPF3
ATUPF3/UPF3; nucleotide binding ATUPF3,n/a,UPF3,n/a
AAATGACTCTCGACCGAGCCAGTCTTCCACTTTTGTGCAGTCTGAGCAAAGAGTGGAACCCTCAGAAGCA
AT1G33980 A000014_01
AT1G33640.1
AT1G33640.1
unknown protein
TTTGACAAAGGATTTCAAGATGAAGGATTGCTTCCTCGGCTGCAAAGACGGTTTGACGACCACCATTTAA
AT1G33640 A000015_01
AT1G17560.1
HLL
HLL (HUELLENLOS); structural constituent of ribosome HLL,HUELLENLOS
AAATGCGTGGATAACTCGTGTGCTAAAGAGGTGATGTGCATTCAATCCCTGAGAGGTAAGAAAGGAGCAA
AT1G17560 A000016_01
AT1G09700.1
DRB1, HYL1
HYL1 (HYPONASTIC LEAVES 1) DRB1,DSRNA-BINDING PROTEIN 1,HYL1,HYPONASTIC LEAVES 1
AAAACGATCAGTCAGAGAAAATTGAGACAACGCCAAATCTGGAACCTTCTTCATGCATGAACGGGTTAAA
AT1G09700 A000017_01
AT1G80040.2
AT1G80040.2
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32440.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67646.1); contains InterPro domain UBA-like (InterPro:IPR009060)
AAACCCCCCGACCAGTGGTGATGACTGGGTTGAATTGTTAGTCAGGGAAGTGTTACAATCGTCTGGTACA
AT1G80040 A000018_01
AT1G12170.1
AT1G12170.1
F-box family protein
AAGCTTTGCGTTTATATTGTGAGGGGCAATGCGTTGACGAAGATTCAAATTGTAGGTGTTGATGCTAAAA
AT1G12170 A000019_01
AT1G12150.1
AT1G12150.1
similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G17210.1); similar to Prefoldin [Medicago truncatula] (GB:ABD28587.1); contains InterPro domain Protein of unknown function DUF827, plant (InterPro:IPR008545)
AAACTGCTAGTGTTGAGGAAAGAATATGAGCCTGAGCTCTCAAGAACTCTTGAAGCCAAGCTGTTAGAGA
AT1G12150 A000020_01
AT1G60220.1
AT1G60220.1
cysteine-type peptidase
AAAGGAAAGACCTGGGAATGTTCGACAAGAAGTGGTTTAGACCCGATGAAGCCTCTGCTCTGAGAATCAA
AT1G60220
30741 5974 Kbytes .Supplementary file Size Download File type/resource GPL9989_023137_D_GEO_20090228.txt.gz
1.7 Mb
(ftp) (http) TXT
Less...
More...