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Series GSE100044 Query DataSets for GSE100044
Status Public on Jun 15, 2017
Title Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome (H4R3me2s ChIP-Seq)
Organism Human gammaherpesvirus 8
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The objective of this study was to identify the symmetric methylation sites on KSHV genome during latency and lytic reactivation
Overall design KSHV infected, TRExBCBL1-RTA cells were induced with doxycycline for 12h to trigger the lytic reactivation, cells were crosslinked and subjected for chromatin isolation and sonication. ChIP assay was performed using anti-H4R3sym antibody, Control IgG antibody, or Histone H4 antibody.
Contributor(s) Verma SC
Citation(s) 28678843
Submission date Jun 14, 2017
Last update date Jul 25, 2021
Contact name Subhash C Verma
Phone 775-682-6743
Organization name University of Nevada, Reno
Department Microbiology and Immunology
Lab Verma Lab
Street address 1664 N Virginia Street, MS 320
City Reno
State/province NV
ZIP/Postal code 89557
Country USA
Platforms (1)
GPL23366 Illumina NextSeq 500 (Human gammaherpesvirus 8)
Samples (8)
GSM2668641 Und-Input
GSM2668642 Und-IgG ChIP
GSM2668643 Und-H4 ChIP
This SubSeries is part of SuperSeries:
GSE98058 Identification of symmetric methylation of histone H4 arginine 3 on KSHV genome
BioProject PRJNA390547
SRA SRP109223

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Supplementary file Size Download File type/resource
GSE100044_RAW.tar 3.6 Mb (http)(custom) TAR (of WIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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