NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE100306 Query DataSets for GSE100306
Status Public on Nov 13, 2017
Title MSK1 regulates luminal cell differentiation and metastatic dormancy in breast cancer
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary For many breast cancer (BCa) patients, symptomatic bone metastases appear after years or even decades of la­tency. How metastatic cells disseminate, and how micromet­astatic lesions remain dormant and undetectable yet initiate colonization, are major questions in cancer research. Here we identify and func­tionally analyse a molecular mechanism involved in bone metastatic latency of estrogen receptor–positive (ER)+ BCa. We developed an in vivo loss-of-function, genome-wide shRNA screening to identify genes relevant for long-latent relapse in BCa. This screen revealed the kinase MSK1 as an important regulator of metastatic dormancy. Importantly, low MSK1 expression associates with early metastasis in ER+ BCa patients. Reduced MSK1 levels impaired cellular differentiation and increased the bone homing and growth capacity of metastatic cells. MSK1 modulates chromatin status at promoters to regulate the expression of luminal differentiation genes, including those for the GATA-3 and FOXA1 transcription fac­tors, which prevent the progression of ER+ BCa towards metastasis. Our results identify the regulation of luminal cell differentiation by MSK1 via modulation of chromatin remodelling to be a key mechanism for controlling metastatic dormancy in BCa. We propose that MSK1 could be a useful marker for stratifying BCa patients as high- or low-risk for early relapse, allowing patients to receive appropriate treatments.
 
Overall design 4 samples were analysed, 2 shControl samples for each of the phosphorylation sites (S10P and S28P) and 2 samples of the shMSK1 for each of the phosphorylation sites. In addition, for the shControl and shMSK1 Input-DNA was used.
 
Contributor(s) Gawrzak S, Rinaldi L, Arenas EJ, Salvador F, Rojo F, del Barco Barrantes I, Cejalvo J, Palafox M, Guiu M, Berenguer-Llergo A, Symeonidi A, Stephan-Otto Attolini C, Urosevic J, Bellmunt A, Gregorio S, Kalafatovic D, Arnal-Estapé A, Müllauer B, Groeneveld R, Serra C, Cortes J, Rovira A, Muñoz M, Lluch A, Arribas J, Serra V, Albanell J, Prat A, Nebreda AR, Aznar-Benitah S, Gomis RR
Citation(s) 29358704
Submission date Jun 21, 2017
Last update date Jul 25, 2021
Contact name Aikaterini Symeonidi
E-mail(s) ksymeonidh@gmail.com
Organization name Institut for Research in Biomedicine (IRB-Barcelona)
Department Oncology
Lab Stem cells and Cancer Lab
Street address Baldiri i Reixac, 10
City Barcelona
State/province Barcelona
ZIP/Postal code 08028
Country Spain
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (6)
GSM2677643 Input DNA from shMSK1 cells
GSM2677644 ChIP-seq_S10P of shMSK1 cells
GSM2677645 ChIP-seq_S28P of shMSK1 cells
Relations
BioProject PRJNA391297
SRA SRP110021

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE100306_RAW.tar 2.0 Gb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap