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| Status |
Public on Jul 03, 2020 |
| Title |
Systematic identification of Circular RNAs in pre-ovulatory ovarian follicles of goats |
| Organism |
Capra hircus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
We deep sequenced and analyzed circRNA using deep RNA sequencing (RNA-seq) in pre-ovulatory follicle samples of Macheng black goats and Boer goats. We analyzed the RNA-seq data with 301 million reads and 288 million reads, and reveal the expression profiles of circRNAs and predicted 13,950 circRNAs. 827 circRNA host genes, mostly related to transferase activity and metabolic process. Twenty-four circRNAs were upregulated and 13 were downregulated in the pre-ovulatory follicles of the Boer group compared to their expression in the Macheng group.
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| |
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| Overall design |
Examination of circRNAs expression profile in pre-ovulatory follicle samples of Macheng black goats and Boer goats
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| |
|
| Contributor(s) |
Tao H, Chen M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jul 03, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Hu Tao |
| E-mail(s) |
woshiap@hotmail.com
|
| Phone |
+8602787680959
|
| Organization name |
Hubei Academy of Agricultural Sciences
|
| Street address |
Shizishan street
|
| City |
Wuhan |
| State/province |
Hubei |
| ZIP/Postal code |
430064 |
| Country |
China |
| |
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| Platforms (1) |
| GPL22146 |
Illumina HiSeq 4000 (Capra hircus) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA392965 |
| SRA |
SRP111020 |
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