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| Status |
Public on Jul 21, 2017 |
| Title |
Genome-wide Analysis Reveals Extensive Changes in LncRNAs during Skeletal Muscle Development in Hu sheep |
| Organism |
Ovis aries |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
To explore functional lncRNAs during sheep muscle growth, we systematically investigated lncRNAs using strand-specific Ribo-Zero RNA Sequencing at three key developmental stages of Hu sheep (110-day fetus, 5-day-old lamb and 2-year-old adult)
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| Overall design |
LncRNA profiles of Hu sheep were generated by deep sequencing, three longissimus dorsi muscle samples for each developmental stage, including 110-day fetus, 5-day-old lamb and 2-year-old adult, using Illumina.
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| Contributor(s) |
Zhang Y, Ren C |
| Citation(s) |
28763026 |
| |
| Submission date |
Jul 20, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Caifang Ren |
| E-mail(s) |
rencaifang@hotmail.com
|
| Organization name |
Jiangsu Engineering Technology Research Center of Mutton Sheep and Goat Industry, Nanjing Agricultural University
|
| Street address |
1 Weigang
|
| City |
Nanjing |
| State/province |
Jiangsu |
| ZIP/Postal code |
210095 |
| Country |
China |
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| Platforms (1) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA395156 |
| SRA |
SRP113172 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE101669_All_gene_fpkm.xlsx |
2.6 Mb |
(ftp)(http) |
XLSX |
| GSE101669_Fetus1_Fetus2_Fetus3_vs_Adult1_Adult2_Adult3.DEG_final_genes.xls.gz |
351.0 Kb |
(ftp)(http) |
XLS |
| GSE101669_Fetus1_Fetus2_Fetus3_vs_Adult1_Adult2_Adult3.DEG_final_lncRNAs.xls.gz |
15.5 Kb |
(ftp)(http) |
XLS |
| GSE101669_Fetus1_Fetus2_Fetus3_vs_Lamb1_Lamb2_Lamb3.DEG_final_genes.xls.gz |
149.3 Kb |
(ftp)(http) |
XLS |
| GSE101669_Fetus1_Fetus2_Fetus3_vs_Lamb1_Lamb2_Lamb3.DEG_final_lncRNAs.xls.gz |
9.6 Kb |
(ftp)(http) |
XLS |
| GSE101669_Lamb1_Lamb2_Lamb3_vs_Adult1_Adult2_Adult3.DEG_final_genes.xls.gz |
153.7 Kb |
(ftp)(http) |
XLS |
| GSE101669_LncRNA.fa.gz |
2.8 Mb |
(ftp)(http) |
FA |
| GSE101669_LncRNA_fpkm.xlsx |
641.8 Kb |
(ftp)(http) |
XLSX |
| GSE101669_lamb1_lamb2_lamb3_vs_Adult1_Adult2_Adult3.DEG_final_lncRNAs.xls.gz |
6.6 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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