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Series GSE10197 Query DataSets for GSE10197
Status Public on Feb 01, 2009
Title cDNA aCGH study of pure DCIS without invasive tumor, DCIS associated with IDC and its IDC component
Organism Homo sapiens
Experiment type Genome variation profiling by array
Summary cDNA aCGH study of pure DCIS (breast duct carcinoma in situ) without invasive tumor, DCIS associated with IDC (breast invasive duct carcinoma) and its IDC component
23 patients: 6 pure DCIS without invasive cancer and no history of invasive cancer, 17 DCIS associated with IDC. Out of the latter 1 tumor had only enough DCIS (#16) for aCGH and one - IDC (#23)
Keywords: Comparative clinical study
 
Overall design Histological sections microdissected, DNA extracted, subjected to whole genome amplification protocol (SCOMP) and aCGH.

The replicate raw data file GSM257548_2.gpr (dcis19_2.gpr) for GSM257548 is not available.
 
Contributor(s) Done S, Iakovlev V
Citation(s) 18628458
Submission date Jan 17, 2008
Last update date Mar 19, 2012
Contact name Susan Done
E-mail(s) sdone@uhnres.utoronto.ca
Organization name Ontario Cancer Institute
Street address 610 University Ave
City Toronto
ZIP/Postal code M5G2M9
Country Canada
 
Platforms (1)
GPL6382 UHN cDNA microarray
Samples (38)
GSM257530 Breast duct carcinoma in situ, no invasive cancer identified PureDCIS01
GSM257531 Breast duct carcinoma in situ, no invasive cancer identified PureDCIS02
GSM257532 Breast duct carcinoma in situ, no invasive cancer identified PureDCIS03
Relations
BioProject PRJNA108313

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10197_RAW.tar 117.7 Mb (http)(custom) TAR (of GPR)
GSE10197_non_normalized_data.txt 5.3 Mb (ftp)(http) TXT
Processed data included within Sample table
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