NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE102154 Query DataSets for GSE102154
Status Public on Dec 31, 2022
Title Cerebellar abiotrophy in working Kelpies with a later clinical onset
Organism Canis lupus familiaris
Experiment type SNP genotyping by SNP array
Summary Australian working Kelpie dogs are known to be affected with an autosomal recessive form of inherited cerebellar ataxia (cerebellar abiotrophy, CA) that is characterised by a degeneration of Purkinje and granule cells in the cerebellar cortex. The clinical signs of CA include cerebellar ataxia, head tremor, motor in-coordination, wide based stance and high stepping gait, with varied clinical onset age. The clinical and pathological features are similar to cerebellar ataxias in humans. The genome-wide association study on a group of working Kelpies affected with the later onset form of CA identified a region on chromosome 9 to be strongly associated with the disease phenotype. Homozygosity analysis and whole genome sequencing identified a missense single nucleotide polymorphism, that segregated with the CA phenotype.
 
Overall design 9 cases and 154 healthy controls
Please note that the .ped file contains the total 172 sample data including the additional 9 control sample data (306-311, 316-18 whose raw data is unavailable).
 
Contributor(s) Pan AY, Wade CM, Taylor RM, Williamson P
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Aug 02, 2017
Last update date Jan 01, 2023
Contact name Annie Pan
Organization name University of Sydney
Department School of Life and Environmental Sciences
Street address Reagent Crescent
City CAMPERDOWN
State/province NSW
ZIP/Postal code 2050
Country Australia
 
Platforms (1)
GPL20953 CanineHD BeadChip
Samples (163)
GSM2728912 GenomicDNA_Control_6029
GSM2728913 GenomicDNA_Control_6142
GSM2728914 GenomicDNA_Control_6143
Relations
BioProject PRJNA396882

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE102154_MAP_processed_withSNPidentifiers_CanFam2.map.gz 1.4 Mb (ftp)(http) MAP
GSE102154_PED_processed_withSNPidentifiers_CanFam2.ped.gz 7.4 Mb (ftp)(http) PED
GSE102154_RAW.tar 445.6 Mb (http)(custom) TAR (of IDAT)
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap