|
| Status |
Public on Dec 26, 2018 |
| Title |
Next generation sequencing facilitates quantitative transcriptomic comparison between HA107 conditioned and unconditioned germ-free small intestinal tissue. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The goal of this study is to identify durable transcriptomic reprogramming after transient bacterial colonisation in germ-free mice.
|
| |
|
| Overall design |
The HA107 conditioned mice were prepared by reversible colonisation (10^10 CFU bacterial gavage for four times on alternate days) two weeks prior to the small intestinal sampling. Unconditioned mice were trated similarly with PBS gavage.
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| |
|
| Contributor(s) |
Uchimura Y, Macpherson AJ |
| Citation(s) |
30193848 |
| |
| Submission date |
Aug 11, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Andrew J. Macpherson |
| E-mail(s) |
andrew.macpherson@dbmr.unibe.ch
|
| Organization name |
University of Bern
|
| Department |
Department for BioMedical Research
|
| Lab |
Gastroenterogy
|
| Street address |
Murtenstrasse 35
|
| City |
Bern |
| State/province |
Bern |
| ZIP/Postal code |
3008 |
| Country |
Switzerland |
| |
|
| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA397992 |
| SRA |
SRP115279 |
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