|
| Status |
Public on May 24, 2018 |
| Title |
Whole body RNA-seq from developmental stages of Camponotus ants |
| Organism |
Camponotus floridanus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
RNA from Camponotus embryos, instar 1 larvae, instar 4 larvae, early pupae, late pupae (minor and major), adult workers, and males was sequenced to look for gene expression changes throughout development.
|
| |
|
| Overall design |
RNA was extracted from the whole body of the ants and sequenced.
The RNA-seq was performed for a study that reports PacBio-based reassembly for our two ant genomes. However, those versions of the assemblies are not in a database yet. The records will be updated with the proper links to the assembly records once available.
|
| |
|
| Contributor(s) |
Shields E, Bonasio R |
| Citation(s) |
29874592 |
| |
| Submission date |
Aug 14, 2017 |
| Last update date |
Feb 04, 2022 |
| Contact name |
Roberto Bonasio |
| Organization name |
University of Pennsylvania
|
| Department |
Cell and Developmental Biology
|
| Lab |
Bonasio
|
| Street address |
3400 Civic Center Blvd - SCTR 9-111
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL20286 |
Illumina NextSeq 500 (Camponotus floridanus) |
|
| Samples (15)
|
| GSM2741662 |
C. flo instar 1 larvae - whole body - rep2 |
| GSM2741663 |
C. flo instar 4 larvae - whole body - rep 1 |
| GSM2741664 |
C. flo instar 4 larvae - whole body - rep 2 |
| GSM2741665 |
C. flo early pupae - whole body - rep 1 |
| GSM2741666 |
C. flo early pupae - whole body - rep 2 |
| GSM2741667 |
C. flo late pupae minor - whole body - rep1 |
| GSM2741668 |
C. flo late pupae minor - whole body - rep2 |
| GSM2741669 |
C. flo late pupae major - whole body - rep1 |
| GSM2741670 |
C. flo late pupae major - whole body - rep2 |
| GSM2741671 |
C. flo minor - whole body - rep1 |
| GSM2741672 |
C. flo minor - whole body - rep2 |
| GSM2741673 |
C. flo male - whole body |
|
| This SubSeries is part of SuperSeries: |
| GSE102605 |
RNA-seq from Camponotus and Harpegnathos ants for genome annotation |
|
| Relations |
| BioProject |
PRJNA398200 |
| SRA |
SRP115382 |
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