|
| Status |
Public on Aug 01, 2018 |
| Title |
RNA Sequencing of Mycobacterium dioxanotrophicus PH-06 |
| Organism |
Mycobacterium dioxanotrophicus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Mycobacterium dioxanotrophicus PH-06 can degrade 1,4-dioxane (dioxane), which is a groundwater contaminant of emerging concern. In order to find the genes involved in dioxane degradation. RNA sequencing was first used to investigate gene expression levels of PH-06 during growth on two different carbon sources (dioxane and glucose). The sequencing shows that a monooxygenase gene cluster was upregulated when treated with dioxane relative to glucose.
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| |
|
| Overall design |
2 samples, no replicate
|
| |
|
| Contributor(s) |
He Y |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Aug 23, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
Ya He |
| E-mail(s) |
yh38@rice.edu
|
| Phone |
8329752665
|
| Organization name |
Rice University
|
| Department |
Department of Civil and Environmental Engineering
|
| Street address |
6100 MAIN ST, MS-519
|
| City |
Houston |
| State/province |
Texas |
| ZIP/Postal code |
77005 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL23948 |
Illumina HiSeq 2500 (Mycobacterium sp. PH-06) |
|
| Samples (2) |
| GSM2752526 |
RNA sequencing of Mycobacterium dioxanotrophicus PH-06 treated with 1,4-dioxane |
| GSM2752527 |
RNA sequencing of Mycobacterium dioxanotrophicus PH-06 treated with glucose |
|
| Relations |
| BioProject |
PRJNA399766 |
| SRA |
SRP116048 |
