|
| Status |
Public on Jan 01, 2018 |
| Title |
Transcriptome-wide profiling of translation efficiency using mRNA-seq and Ribo-seq in ER stress-induced NIH3T3 cells |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
|
| Summary |
We report systematical profiling of translation efficiency in stress conditions of NIH3T3 cells.
|
| |
|
| Overall design |
In this study, we pharmacologically induced ER stress by treatment of thapsigargin (THAP). Ribo-seq and RNA-seq were parallelly conducted in whole cells with DMSO- or THAP-treated NIH3T3 cells in duplicate.
|
| |
|
| Contributor(s) |
Woo YM, Kwak H |
| Citation(s) |
29576526 |
| |
| Submission date |
Sep 10, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Yumi Woo |
| E-mail(s) |
yw768@cornell.edu
|
| Organization name |
Cornell University
|
| Department |
Molecular Biology and Genetics
|
| Lab |
Kwak Lab
|
| Street address |
526 Campus Road
|
| City |
Ithaca |
| State/province |
NY |
| ZIP/Postal code |
14853 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (8)
|
|
| Relations |
| BioProject |
PRJNA403993 |
| SRA |
SRP117211 |
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