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Series GSE104314 Query DataSets for GSE104314
Status Public on Sep 25, 2020
Title Intraindividual Genetic Variation in Human Fetuses with a Preimplantation Origin
Organism Homo sapiens
Experiment type Genome variation profiling by genome tiling array
Summary Intraindividual copy number variations (CNVs) happen post-zygotically, however their origin is largely unknown. They might appear either through aging or may resist following the common chromosome instability at the preimplantation stage. To uncover a part of this question we investigated fetal mosaicism and its origin. According to distribution pattern of frequent CNVs in derivatives of different germ layers, their origin is early development including preimplantation, whereas CNVs with low frequency occur in later stages. Both fetuses share CNVs, some in the same tissues and some other in different tissues. Functional analysis showed that altered genes were involved in embryonic development pathways. Each organ inherits CNVs with an unpredictable pattern due to extensive cell mixing/migration in embryonic development. Since we have found frequent intraindividual reciprocal CNVs as events with preimplantation origin in both fetuses, mosaic embryo transfer should be performed with caution because it may increase susceptibility to develop early/late onset diseases with genetic component even though recent reports seems to encourage IVF clinics for mosaic embryo transfer.
 
Overall design Two normal fetuses were achieved following therapeutic abortion due to maternal indications on the 19th week of natural pregnancy. We studied DNA from 22 tissues of each fetus for copy number changes. The reciprocal aberrations, according to comparison of tissues of each fetus, were subsequently validated using qPCR.
 
Contributor(s) Bazrgar M, Gourabi H, Karimpour-Fard A, Boroujeni PB, Anisi K, Movaghar B, Valojerdi MR
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Submission date Sep 27, 2017
Last update date Jul 25, 2021
Contact name Masood Bazrgar
E-mail(s) mbazrgar@royaninstitute.org
Phone 00982123562737
Organization name Royan Institute
Street address Banihashem
City Tehran
ZIP/Postal code 1665659911
Country Iran
 
Platforms (1)
GPL24050 Agilent-027216 Oxford Gene Technology (OGT) 180K+15K array (Leuven, CytoSure Syndrome Plus v2)
Samples (44)
GSM2794882 A 32 E1 Testis cy329E1 Cartilage
GSM2794883 B 29E1 Cartilage cy3 14E1 Lung
GSM2794884 C 14E1 Lung cy3 11E1 Pancreas
Relations
BioProject PRJNA412322

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104314_RAW.tar 361.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data provided as supplementary file

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