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Series GSE10456 Query DataSets for GSE10456
Status Public on Feb 10, 2008
Title cDNA aCGH study of whole genome amlification effect on analysis of FFPE microdissected human breast cancer
Organism Homo sapiens
Experiment type Genome variation profiling by array
Summary 6 samples of FFPE breast cancer tissue, whole genome amplification methods tested for fidelity: 3 samples amplified by two techniques (SCOMP and DOP) and compaed to non amplified control, 3 samples amplified additionally by the better performing technique (SCOMP)
Keywords: Pre-clinical method validation, whole genome amplification for use with aCGH
 
Overall design Histological sections microdissected, DNA extracted, subjected to whole genome amplification protocol and aCGH.
 
Contributor(s) Done S, Iakovlev V
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 09, 2008
Last update date Mar 19, 2012
Contact name Susan Done
E-mail(s) sdone@uhnres.utoronto.ca
Organization name Ontario Cancer Institute
Street address 610 University Ave
City Toronto
ZIP/Postal code M5G2M9
Country Canada
 
Platforms (1)
GPL6478 University Health Network Microarray Centre 19k human cDNA microarray
Samples (15)
GSM264659 Sample #1 non-amplified control
GSM264660 Sample #2 non-amplified control
GSM264661 Sample #3 non-amplified control
Relations
BioProject PRJNA108011

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10456_RAW.tar 11.3 Mb (http)(custom) TAR (of TXT)
GSE10456_raw_data.txt 3.8 Mb (ftp)(http) TXT
Processed data included within Sample table

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