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| Status |
Public on Feb 16, 2018 |
| Title |
Transcriptome analyses of toxoflavin-dependent genes in Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutants |
| Organism |
Fusarium graminearum |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated toxoflavin-sensitive mutants from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005) under toxoflavin condition.
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| Overall design |
Four samples examined: Fusarium graminearum wild-type strain GZ03639 and three toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005). Two conditions: fungal cultures under toxoflavin condition and minimal media condition.
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| Contributor(s) |
Park J, Jung B, Lee J, Seo Y |
| Citation(s) |
29295978 |
| |
| Submission date |
Oct 05, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Jungwook Park |
| E-mail(s) |
jjuwoogi@pusan.ac.kr
|
| Organization name |
Pusan National University
|
| Department |
Microbiology
|
| Street address |
Pusan National University, 2, Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 609-735, Korea
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| City |
Busan |
| ZIP/Postal code |
ASI|KR|KS012|PUSAN |
| Country |
South Korea |
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| Platforms (1) |
| GPL17573 |
Illumina HiSeq 2000 (Fusarium graminearum) |
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| Samples (16)
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| Relations |
| BioProject |
PRJNA413358 |
| SRA |
SRP119453 |
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