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Series GSE104623 Query DataSets for GSE104623
Status Public on Feb 16, 2018
Title Transcriptome analyses of toxoflavin-dependent genes in Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutants
Organism Fusarium graminearum
Experiment type Expression profiling by high throughput sequencing
Summary Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated toxoflavin-sensitive mutants from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005) under toxoflavin condition.
 
Overall design Four samples examined: Fusarium graminearum wild-type strain GZ03639 and three toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005). Two conditions: fungal cultures under toxoflavin condition and minimal media condition.
 
Contributor(s) Park J, Jung B, Lee J, Seo Y
Citation(s) 29295978
Submission date Oct 05, 2017
Last update date Jul 25, 2021
Contact name Jungwook Park
E-mail(s) jjuwoogi@pusan.ac.kr
Organization name Pusan National University
Department Microbiology
Street address Pusan National University, 2, Busandaehak-ro 63beon-gil, Geumjeong-gu, Busan 609-735, Korea
City Busan
ZIP/Postal code ASI|KR|KS012|PUSAN
Country South Korea
 
Platforms (1)
GPL17573 Illumina HiSeq 2000 (Fusarium graminearum)
Samples (16)
GSM2804250 WT rep 1
GSM2804251 WT rep 2
GSM2804252 TF rep 1
Relations
BioProject PRJNA413358
SRA SRP119453

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE104623_RAW.tar 4.3 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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