|
| Status |
Public on Nov 01, 2018 |
| Title |
Small RNA loci annotation in cacao, spinach and carrot |
| Organisms |
Spinacia oleracea; Theobroma cacao; Daucus carota |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Cacao, spinach and carrot are three important crops with high valuable markets. For these species there isn't already an available genome-wide annotation of small rna. Here, for the first time, we sequenced and annotated small RNAs.
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| |
|
| Overall design |
Small RNA profile of cacao leaf, spinach leaf and carrot leaf and root. grown in control conditions
|
| |
|
| Contributor(s) |
Lunardon A, Johnson N, J.Axtell M |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Oct 06, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Michael J Axtell |
| Organization name |
Penn State University
|
| Department |
Department of Biology
|
| Street address |
University Park
|
| City |
State College |
| State/province |
PA |
| ZIP/Postal code |
16802 |
| Country |
USA |
| |
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| Platforms (3) |
| GPL24089 |
Illumina HiSeq 2500 (Theobroma cacao) |
| GPL24090 |
Illumina HiSeq 2500 (Spinacia oleracea) |
| GPL24091 |
Illumina HiSeq 2500 (Daucus carota) |
|
| Samples (5)
|
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| Relations |
| BioProject |
PRJNA413468 |
| SRA |
SRP119502 |
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