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| Status |
Public on Nov 24, 2008 |
| Title |
Comparison of the transcriptomes of hmgb1 vs Col-0 |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
Testing the consequences of the absence of the chromatin-associated HMGB1 protein on the transcriptome in Arabidopsis.
Keywords: Comparison of mutant and wildtype samples.
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| Overall design |
Four replicate RNA extractions were performed of each genotype using independent pools of plants.
hmgb1#1 (Cy5) vs. Col-0#1 (Cy3)
Col-0#2 (Cy5) vs. hmgb1#2 (Cy3) dye-swap
hmgb1#3 (Cy5) vs. Col-0#3 (Cy3)
Col-0#5 (Cy5) vs. hmgb1#4 (Cy3) dye-swap
Samples were hybridized in two dye-swaps.
The data were normalized over all 4 hybridizations to obtain one, single log-ratio(Sample/Reference).
The raw data files of all four of the hybridizations are attached to the Sample.
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| Contributor(s) |
Lildballe DL, Grasser KD |
| Citation(s) |
18822296 |
| |
| Submission date |
Feb 26, 2008 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Rekin's Janky |
| E-mail(s) |
Nucleomics.Bioinformatics@vib.be
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| Organization name |
VIB
|
| Department |
Nucleomics Core
|
| Street address |
Herestraat 49 Box 816
|
| City |
Leuven |
| ZIP/Postal code |
B-3000 |
| Country |
Belgium |
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| Platforms (1) |
| GPL6177 |
Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA107709 |
