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Series GSE10638 Query DataSets for GSE10638
Status Public on Nov 24, 2008
Title Comparison of the transcriptomes of hmgb1 vs Col-0
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Testing the consequences of the absence of the chromatin-associated HMGB1 protein on the transcriptome in Arabidopsis.
Keywords: Comparison of mutant and wildtype samples.
Overall design Four replicate RNA extractions were performed of each genotype using independent pools of plants.
hmgb1#1 (Cy5) vs. Col-0#1 (Cy3)
Col-0#2 (Cy5) vs. hmgb1#2 (Cy3) dye-swap
hmgb1#3 (Cy5) vs. Col-0#3 (Cy3)
Col-0#5 (Cy5) vs. hmgb1#4 (Cy3) dye-swap
Samples were hybridized in two dye-swaps.
The data were normalized over all 4 hybridizations to obtain one, single log-ratio(Sample/Reference).
The raw data files of all four of the hybridizations are attached to the Sample.
Contributor(s) Lildballe DL, Grasser KD
Citation(s) 18822296
Submission date Feb 26, 2008
Last update date Dec 06, 2012
Contact name Rekin's Janky
Organization name VIB
Department Nucleomics Core
Street address Herestraat 49 Box 816
City Leuven
ZIP/Postal code B-3000
Country Belgium
Platforms (1)
GPL6177 Agilent-015059 Arabidopsis 3 Oligo Microarray 4x44K G2519F (Feature Number version)
Samples (1)
GSM268039 4552/4554/4556/4558
BioProject PRJNA107709

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10638_RAW.tar 53.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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