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Series GSE106912 Query DataSets for GSE106912
Status Public on May 29, 2018
Title Comparative analysis of gene expression in tomato leaves during mild and severe potato spindle tuber viroid infection.
Organism Solanum lycopersicum
Experiment type Expression profiling by array
Summary We employed microarray analysis to observe dynamic changes of gene expression profiles in response to mild and severe potato spindle tuber (PSTVd) infection in the leaves of tomato cv ‘Rutgers’.
 
Overall design Solanum lycopersicum cv 'Rutgers' was infected with mild (M) and severe (S23) PSTVd isolates. Leaf samples were collected at four phases of disease: i) symptomless – 8 days post inoculation (dpi); ii) early stage of symptoms -17 dpi; iii) full spectrum of symptoms – 24 dpi; iiii) recovery - 49 dpi. Three independent biological replicates of PSTVd-M, PSTVd-S23 and pUC9 (control) were analised at every time point but two replicates of PSTVd-M at 8dpi. Totally 35 samples of RNA were analysed.
 
Contributor(s) Góra-Sochacka A, Więsyk A, Fogtman A
Citation(s) 29762480
Submission date Nov 15, 2017
Last update date May 29, 2018
Contact name Aneta Więsyk
E-mail(s) anetaw@ibb.waw.pl
Organization name Institute of Biochemistry and Biophysics, PAS
Street address Pawinskiego 5a
City Warszawa
ZIP/Postal code 02-106
Country Poland
 
Platforms (1)
GPL4741 [Tomato] Affymetrix Tomato Genome Array
Samples (35)
GSM2857535 Solanum lycopersicum leaves inoculated with PSTVd-M at 8 dpi biological rep1
GSM2857536 Solanum lycopersicum leaves inoculated with PSTVd-M at 8 dpi biological rep2
GSM2857537 Solanum lycopersicum leaves inoculated with PSTVd-S23 at 8 dpi biological rep1
Relations
BioProject PRJNA418441

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Supplementary file Size Download File type/resource
GSE106912_RAW.tar 29.1 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table
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