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Series GSE107020 Query DataSets for GSE107020
Status Public on Aug 13, 2018
Title Algesic MBP peptide induce pain-specific signaling in rodent Schwann Cells
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary We demonstrated the pain-specific response to the algesic peptide fragment MBP84-104 of myelin basic protein that induces pain if injected into sciatic nerve of rats and mice. We used the wild-type peptide MBP 84-104, H89G mutant peptide (MBP84-104-H89G), scramble peptide (MBP84-104-SCR) and phosphomimetic peptide MBP84-104-mimTT to stimulate the primary rat Schwann cell cultures. After 24h we isolated total RNA and conducted genome wide RNA-seq. In addition, we performed RNA-seq using Schwann cells constitutively expressing an MBP84-104-mCherry construct. The gene expression data was analyzed using Ingenuity Pathway Analysis software. We conclude that the Schwann cells expressing MBP84-104 constructs stimulate pain-specific signaling pathways thus representing a relevant model to study neuropathic pain.
 
Overall design examination of gene expression in Schwann cells stimulated by MBP fragment
 
Contributor(s) Chernov AV, Strongin AY, Shubayev V
Citation(s) 30079618
Submission date Nov 16, 2017
Last update date May 15, 2019
Contact name Andrei Chernov
E-mail(s) achernov@ucsd.edu
Phone 858 952 2854
Organization name University of California San Diego
Department Anesthesiology
Lab Chernov Lab
Street address 9500 Gilman Dr
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (1)
GPL20084 Illumina NextSeq 500 (Rattus norvegicus)
Samples (6)
GSM2859819 SC_84-105WT [GE18S07]
GSM2859820 SC_84-105WT [GE18S08]
GSM2859821 SC_mimTT [GE18S09]
Relations
BioProject PRJNA418791
SRA SRP125137

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Supplementary file Size Download File type/resource
GSE107020_FPKM.txt.gz 370.5 Kb (ftp)(http) TXT
GSE107020_RAW.tar 3.4 Mb (http)(custom) TAR (of FPKM_TRACKING)
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Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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