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Series GSE107272 Query DataSets for GSE107272
Status Public on Feb 01, 2018
Title A transcriptomic and functional analysis of the interaction between Caenorhabditis elegans and Stenotrophomonas maltophilia
Organism Caenorhabditis elegans
Experiment type Expression profiling by array
Summary The goal of this study was to elucidate genes that are employed by the bacterivorous nematode Caenorhabditis elegans to respond to the emerging nosocomial bacterial pathogen Stenotrophomonas maltophilia.
 
Overall design 12 microarrays (4 per bacterial treatment) were used to identify genes that were differentially expressed when exposed to virulent (JCMS) and avirulent (K279a) strains of S. maltophilia and an avirulent (OP50) strain of E. coli.
 
Contributor(s) White CV, Herman MA
Citation(s) 30177956
Submission date Nov 22, 2017
Last update date May 16, 2019
Contact name Michael A Herman
E-mail(s) mherman@ksu.edu
Organization name Kansas State University, Ecological Genomics Institute
Department Division of Biology
Street address 266 Chalmers Hall
City Manhattan
State/province KS
ZIP/Postal code 66506
Country USA
 
Platforms (1)
GPL16196 NimbleGen C. elegans 12x135K microarrays
Samples (12)
GSM2863518 K279a 24hours rep1
GSM2863519 JCMS 24hours rep1
GSM2863520 OP50 24hours rep1
Relations
BioProject PRJNA419529

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107272_RAW.tar 43.6 Mb (http)(custom) TAR (of CALLS, PAIR)
Processed data included within Sample table
Processed data provided as supplementary file

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