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Series GSE108233

Query DataSets for GSE108233

Status

Public on Apr 12, 2018

Title

Single cell analysis of Granuloma crypt epithelium

Organism

Mus musculus

Experiment type

Expression profiling by high throughput sequencing

Summary

The purpose of this study is to compare the cellular populations present within granuloma (Sca1+) and non-granuloma (Sca-1–) crypt epithelum arising from parasitic H polygyrus infections.

Overall design

Single cell transcriptomes of Sca-1+(Granuloma) and Sca-1–(Non-granuloma) were generated from infected mice and then re-merged for population comparison

Contributor(s)

Nusse Y, Savage A

Citation(s)

29950724

Submission date

Dec 18, 2017

Last update date

Mar 19, 2019

Contact name

Ysbrand Nusse

E-mail(s)

Ysbrand.Nusse@ucsf.edu

Organization name

UCSF

Street address

513 Parnassus Ave

City

San Francisco

State/province

ZIP/Postal code

94122

Country

USA

Platforms (1)

GPL21103

Illumina HiSeq 4000 (Mus musculus)

Samples (2)

GSM2893434	Sca1pos
GSM2893435	Sca1neg

Relations

BioProject

PRJNA422895

SRA

SRP126962

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE108233_Sca1_Expression_matrix_cells.csv.gz	600.5 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster0.csv.gz	40.1 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster1.csv.gz	35.6 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster10.csv.gz	21.6 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster11.csv.gz	13.6 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster12.csv.gz	15.9 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster13.csv.gz	12.2 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster14.csv.gz	8.3 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster15.csv.gz	6.4 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster16.csv.gz	3.7 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster17.csv.gz	2.7 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster18.csv.gz	2.1 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster19.csv.gz	325.5 Kb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster2.csv.gz	33.2 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster3.csv.gz	34.7 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster4.csv.gz	31.5 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster5.csv.gz	33.1 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster6.csv.gz	21.7 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster7.csv.gz	19.0 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster8.csv.gz	17.9 Mb	(ftp)(http)	CSV
GSE108233_Sca1_Expression_matrix_cluster9.csv.gz	19.3 Mb	(ftp)(http)	CSV
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Processed data are available on Series record