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Series GSE109455 Query DataSets for GSE109455
Status Public on Jun 14, 2018
Title Gene regulation in monocytes and CD4+ T cells from low-SES vs. high-SES children with asthma
Organism Homo sapiens
Experiment type Expression profiling by array
Summary There are marked socioeconomic disparities in pediatric asthma control. To identify the molecular origins of these disparities, we performed genome-wide expression profiling of monocytes and T-helper cells isolated from pediatric asthma patients of lower- and higher socioeconomic status (SES).
 
Overall design Microarray-based gene expression profiling was conducted on 98 CD14+ (monocyte) and CD3+/CD4+ (helper T cell) peripheral blood cell samples collected from children diagnosed by a physician with asthma. Children were from lower-SES (household income < $50,000 annually) or higher-SES (household income > $140,000 annually) families. Peripheral blood monocytes and T-helper lymphocytes were isolated, and microarray-based expression profiling was conducted on extracted RNA. Participants were also assessed for background characteristics (age [years], race [Caucasian,Non-hispanic=1/Other=0], body mass index/BMI [kg/m^2]), asthma severity (following guidelines from the National Asthma Education and Prevention Program/Expert Panel Report 2; Bacharier LB, Strunk RC, Mauger D, White D, Lemanske RFJ, Sorkness CA. Classifying asthma severity in children: mismatch between symptoms, medication use, and lung function. Am J Respir Crit Care Med. 2004;170 (4):426-432), use of inhaled corticosteroids (ICS; days used in past week), and use of short-acting beta-adrenergic agonists (SABA; days used in past week). Dichotomous variables were coded 0=no/absent and 1=yes/present.
 
Contributor(s) Cole S
Citation(s) 29528197
Submission date Jan 19, 2018
Last update date Jun 14, 2018
Contact name Steve Cole
Organization name UCLA School of Medicine
Department Medicine
Street address 11-934 Factor Bldg, UCLA
City Los Angeles
State/province CA
ZIP/Postal code 90095-1678
Country USA
 
Platforms (1)
GPL10904 Illumina HumanHT-12 V4.0 expression beadchip (gene symbol)
Samples (196)
GSM2943603 101-CD14
GSM2943604 102-CD14
GSM2943605 105-CD14
Relations
BioProject PRJNA430918

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109455_raw_data.txt.gz 33.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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