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Series GSE10946 Query DataSets for GSE10946
Status Public on Mar 27, 2008
Title Gene expression microarray profiles of cumulus cells in lean and overweight-obese polycystic ovary syndrome patients
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Objective: The etiology of PCOS is mostly unknown. Existing data support both genetic and environmental factors in its pathogenesis. Design: Prospective case - control study. Setting: University Hospital. Patients: 25 patients undergoing IVF-ICSI treatment. Intervention: Genome-wide oligonucleotide microarray technology was used to study differential gene-expression patterns of cultured human cumulus cells from IVF patients divided into 4 groups according to disease state (PCOS vs. Control) and BMI (Obese vs. Lean). Results: Two differential PCOS gene expression profiles were established: Lean-Type was formed by comparing PCOS lean (PL) vs. non-PCOS lean (NL) individuals; Obese-Type was formed by comparing PCOS obese (PO) vs. non-PCOS (NO) obese patients. Conclusions: Different molecular pathways are associated with PCOS in Lean and Obese individuals, as demonstrated by gene expression profiling of cumulus cells. Our findings provide insights into the molecular pathogenesis of PCOS.
We used microarrays to study the gene expression of human cultured cumulus cells. We compared the genes expression of lean PCOS, Obese PCOS, lean controls and obese controls. Different molecular pathways are associated with PCOS in Lean and Obese patients.
Keywords: disease state analysis
 
Overall design Cumulus cells obtained from woman undergoing IVF/ICSI. Following oocyte retrieval, cumulus cells were stripped from the oocyte, in preparation for the ICSI process, with a micropipette. After 48h in culture the cumulus cells were collected for RNA extraction and hybridization on Affymetrix microarrays. We compered the expression profile of 4 groups - lean PCOS, obese PCOS, lean controls and obese controls.
 
Contributor(s) Kenigsberg S, Bentov Y, Chalifa-Caspi V, Potashnik G, Ofir R, Birk OS
Citation(s) 19141487
Submission date Mar 26, 2008
Last update date Mar 25, 2019
Contact name Shlomit Kenigsberg
E-mail(s) shlomit.kenig@gmail.com
Organization name Create Fertility Centre
Department Research
Lab Ovarian Biology Research
Street address 790 Bay st.
City Toronto
State/province Ontario
ZIP/Postal code M4N1S8
Country Canada
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (23)
GSM277438 cumulus_nonPCOS_Lean_rep1
GSM277439 cumulus_nonPCOS_Lean_rep2
GSM277440 cumulus_nonPCOS_Lean_rep3
Relations
BioProject PRJNA107141

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE10946_RAW.tar 102.7 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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