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Series GSE110125 Query DataSets for GSE110125
Status Public on May 02, 2019
Title Transcriptome response study of arabidopsis wild type (Col6-3), gun1-9 mutant and MORF2 overexpression lines to norflurazon treatment in retrograde signaling
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Analysis of transcriptome response of norflurazon treated or untreated 5-day old whole seedlings with genotypes: Col6-3 (wild type), gun1-9 and MORF2 overexpression lines. GUN1 and MORF2 are involved in chloroplast-to-nucleus retrograde signaling. Results provide insight into the nuclear genes expression profile under control of GUN1 retrograde pathways and the regulation similarity between gun1-9 and MORF2 overexpression lines.
 
Overall design Total RNA samples were isolated from 5-day old whole seedlings with genotypes Col6-3 (wild type), gun1-9 and MORF2 overexpression lines grew under 24 h light condition with 100 µmol.m-2.s-1 light intensity at 22 °C with or without 5 μM norflurazon treatment. MORF2OX and MORF2OX(w) are both overexpression lines of MORF2 but they have different strengths of the phenotype. mRNA expression profiles were generated by deep sequencing, in duplicate, using Illumina HiSeq 2500.
 
Contributor(s) Zhao X, Huang J, Chory J
Citation(s) 30988197
Submission date Feb 05, 2018
Last update date May 02, 2019
Contact name Joanne Chory
E-mail(s) chory@salk.edu
Organization name Salk Institute for Biological Studies
Department Plant Biology Laboratory
Lab PBIO-C
Street address 10010 N Torrey Pines Rd
City La Jolla
State/province CA
ZIP/Postal code 92037
Country USA
 
Platforms (1)
GPL17639 Illumina HiSeq 2500 (Arabidopsis thaliana)
Samples (10)
GSM2977842 Col6-3 LS1
GSM2977843 Col6-3 LS2
GSM2977844 Col6-3 NF1
Relations
BioProject PRJNA432917
SRA SRP132174

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110125_RAW.tar 1.2 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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