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| Status |
Public on May 28, 2008 |
| Title |
Chromatin state maps (H3K4me3 and H3K27me3) from partially and fully reprogrammed mouse cell lines |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
Chromatin state maps (H3K4me3 and H3K27me3) from partially and fully reprogrammed mouse cell lines obtained by ectopic expression of Oct4, Sox2, Klf4 and c-Myc using constitutive retroviral infection of MEFs (MCV6, MCV8, MCV8.1) or induction of lentivirus in secondary B lymphocytes obtained from iPS-derived chimeric mice (BIV8).
Keywords: High-throughput ChIP-sequencing, Illumina, cell type comparison
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| Overall design |
H3K4me3 and H3K27me3 ChIP-Seq in singlicate from three partially reprogrammed cell lines (BIV1, MCV8, MCV6), one iPS cell line (MCV8.1) and MEFs (subsampled from Mikkelsen et al, Nature, 2007))
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| |
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| Contributor(s) |
Mikkelsen TS, Zhang X, Lander ES, Meissner A |
| Citation(s) |
18509334 |
| |
| Submission date |
Apr 05, 2008 |
| Last update date |
May 15, 2019 |
| Contact name |
Tarjei S Mikkelsen |
| Organization name |
Broad Institute
|
| Street address |
7 Cambridge Center
|
| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02142 |
| Country |
USA |
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| Platforms (1) |
| GPL6693 |
Broad-Mouse-Illumina-Genome-Analyzer-ChIPSeq |
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| Samples (10)
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| Relations |
| SRA |
SRP000215 |
| BioProject |
PRJNA107063 |
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