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Series GSE11172 Query DataSets for GSE11172
Status Public on Jul 06, 2008
Title Genome-wide chromatin state maps of ES cells, ES-derived neural progenitor cells and brain tissue
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Genome-wide chromatin state maps of murine embryonic stem (ES) cells, ES-derived neural progenitor cells and whole brain tissue. The data were generated to examine the correlation between histone and DNA methylation during lineage-commitment.
Keywords: High-throughput ChIP-sequencing, Illumina, cell type comparison
Overall design H3K4me3, H3K4me2 and/or H3K4me1 ChIP-Seq in singlicate from mouse embryonic stem (ES) cells, ES-derived neural progenitor cells and whole brain tissue suspensions
Contributor(s) Mikkelsen TS, Meissner A, Zhang X, Gnirke A, Jaenisch R, Lander ES
Citation(s) 18600261
Submission date Apr 14, 2008
Last update date May 15, 2019
Contact name Tarjei S Mikkelsen
Organization name Broad Institute
Street address 7 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (7)
GSM281692 NP_H3K4me2_ChIPSeq
GSM281693 NP_H3K4me1_ChIPSeq
GSM281694 ES_H3K4me2_ChIPSeq
SRA SRP000230
BioProject PRJNA106863

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11172_RAW.tar 3.2 Gb (http)(custom) TAR (of TXT)
GSE11172_README.aligned.txt 403 b (ftp)(http) TXT
GSE11172_README.densities.txt 657 b (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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