|
| Status |
Public on Sep 30, 2019 |
| Title |
AGO4 participates in germination during salinity |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
In this work we studied the participation of RdDM pathway in response to salinity during germination, we found that the RdDM promotes germination whule AGO4 has an additional RdDM-independent activity that negatively regulates the germination process.
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| |
|
| Overall design |
Col-0, ago4-2 and ago4-3 Arabidopsis germinating seeds under control and salinity conditions, each run was performed with a biological replicate
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| |
|
| Contributor(s) |
Palomar VM, Jimenez V, Covarrubias AA |
| Citation(s) |
33131171 |
| Submission date |
Mar 19, 2018 |
| Last update date |
Apr 24, 2022 |
| Contact name |
Veronica Jimenez-Jacinto |
| E-mail(s) |
vjimenez@ibt.unam.mx
|
| Phone |
+52(777) 3291719
|
| Organization name |
Universidad Nacional Autonoma de Mexico
|
| Department |
Unidad Universitaria de Secuenciación Masiva y Bioinformática
|
| Street address |
Av. Universidad 2001. Col. chamilpa
|
| City |
Cuernavaca |
| State/province |
Morelos |
| ZIP/Postal code |
62130 |
| Country |
Mexico |
| |
|
| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
|
| Samples (12)
|
|
| Relations |
| BioProject |
PRJNA439011 |
| SRA |
SRP136033 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE112051_ColMSvsColNaCl.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE112051_ColMSvsGSE112051_ago42MS.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE112051_ColMSvsGSE112051_ago43MS.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE112051_ColNaClvsGSE112051_ago42NaCl.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE112051_ColNaClvsGSE112051_ago43NaCl.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE112051_ago42MSvsago42NaCl.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE112051_ago42MSvsago43MS.txt.gz |
1.4 Mb |
(ftp)(http) |
TXT |
| GSE112051_ago42NaClvsago43NaCl.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| GSE112051_ago43MSvsago43NaCl.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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