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Series GSE112738 Query DataSets for GSE112738
Status Public on Jul 01, 2021
Title Genome-wide identification of miRNAs in C. chinense and C. frutescens
Organisms Capsicum frutescens; Capsicum chinense
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary Profiling of small RNAs identified a total of 359 and 357 conserved; and 490 and 155 novel miRNAs in C. chinense and C. frutescens, respectively. Based on the sequence similarity observed on alignment with already reported plant miRNAs, conserved and novel miRNAs were identified in both the species. The target prediction analysis reveals vital role of miRNAs in regulating genes involved in transcriptions, protein modification, signal transduction and metabolism. Several miRNAs were expressed in a tissue-specific/preferential manner indicating their involvement in tissue/organ development.
 
Overall design Examination of small RNAs sampled from stem, flower, fruits and leaf tissues of C. chinense and C. frutescens.
 
Contributor(s) Ramchiary N, Chhapekar S, Kumar N
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Submission date Apr 05, 2018
Last update date Jul 01, 2021
Contact name Nirala Ramchiary
E-mail(s) nramchiary@jnu.ac.in
Organization name Jawaharlal Nehru University
Department School of life sciences
Lab Laboratory of Translational and Evolutionary Genomics
Street address lab-229, school of life sciences, JNU, New Delhi - 110067
City New Delhi
ZIP/Postal code 110067
Country India
 
Platforms (2)
GPL24847 Illumina NextSeq 500 (Capsicum chinense)
GPL24848 Illumina NextSeq 500 (Capsicum frutescens)
Samples (8)
GSM3082760 C. chinense Stem
GSM3082761 C. chinense Flower
GSM3082762 C. chinense Fruit
Relations
BioProject PRJNA448885
SRA SRP137691

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112738_Total_Conserved_miRNA.xlsx 200.2 Kb (ftp)(http) XLSX
GSE112738_Total_Novel_miRNA.xlsx 120.6 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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