|
Status |
Public on Dec 27, 2018 |
Title |
Genome Wide Chromatin Mapping of accessibility (ATAC-seq) and H3K27ac histone modifications in CD56bright and CD56dim natural killer cells |
Organisms |
Homo sapiens; Mus musculus |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
Summary |
We report the epigenenetic and transcriptional profile of blood natural killer cells. For chromatin analysis we analyze H3K27ac and accessability in CD56bright, CD56dimCD57minus, CD56dimCD57plus and CD56dim natural killer cells, purified from periphrial blood. We also examine transcription and accessability from tonsil derived ILC3 and ieILC1
|
|
|
Overall design |
Examination of 2 different histone modifications and accessability in different cell types
|
|
|
Contributor(s) |
Oltz E, Collins P |
Citation(s) |
30595449 |
|
Submission date |
Apr 06, 2018 |
Last update date |
Mar 29, 2019 |
Contact name |
Patrick Leonard Collins |
E-mail(s) |
patrick.collins@osumc.edu
|
Phone |
6156683538
|
Organization name |
Ohio State University
|
Department |
Microbial Infection and Immunity
|
Street address |
770 BRT, 460 W 12th Ave
|
City |
Columbus |
State/province |
OH |
ZIP/Postal code |
43210 |
Country |
USA |
|
|
Platforms (2) |
GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
|
Samples (49)
|
|
Relations |
BioProject |
PRJNA449077 |
SRA |
SRP137826 |