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GEO accession:
Series GSE112835
Query DataSets for GSE112835
Status
Public on May 01, 2019
Title
SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31040401
Submission date
Apr 06, 2018
Last update date
Oct 21, 2019
Contact name
Wei Xie
E-mail(s)
xiewei121@tsinghua.edu.cn
Organization name
Tsinghua University
Department
School of Life Science
Street address
Haidian District
City
Beijing
ZIP/Postal code
100084
Country
China
Platforms (2)
GPL17021
Illumina HiSeq 2500 (Mus musculus)
GPL21273
HiSeq X Ten (Mus musculus)
Samples (91)
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More...
GSM3084594
RNA_FGO_Dnmt3l_Con_RNA
GSM3084595
RNA_FGO_Dnmt3l_KO_RNA
GSM3084596
RNA_FGO_Setd2_Con_RNA_rep1
GSM3084597
RNA_FGO_Setd2_Con_RNA_rep2
GSM3084598
RNA_FGO_Setd2_KO_RNA_rep1
GSM3084599
RNA_FGO_Setd2_KO_RNA_rep2
GSM3084600
RNA_1C_Setd2_Con_RNA_rep1
GSM3084601
RNA_1C_Setd2_Con_RNA_rep2
GSM3084602
RNA_1C_Setd2_KO_RNA_rep1
GSM3084603
RNA_1C_Setd2_KO_RNA_rep2
GSM3084604
RNA_2C(48h)_Setd2_Con_RNA_rep1
GSM3084605
RNA_2C(48h)_Setd2_Con_RNA_rep2
GSM3084606
RNA_1C(48h)_Setd2_KO_RNA_rep1
GSM3084607
RNA_1C(48h)_Setd2_KO_RNA_rep2
GSM3084608
MethylC_FGO_Dnmt3l_Con_5mC_rep1
GSM3084609
MethylC_FGO_Dnmt3l_Con_5mC_rep2
GSM3084610
MethylC_FGO_Dnmt3l_KO_5mC_rep1
GSM3084611
MethylC_FGO_Dnmt3l_KO_5mC_rep2
GSM3084612
MethylC_FGO_Setd2_Con_5mC_rep1
GSM3084613
MethylC_FGO_Setd2_Con_5mC_rep2
GSM3084614
MethylC_FGO_Setd2_KO_5mC_rep1
GSM3084616
ChIP_GO_P7_H3K36me3_rep1
GSM3084617
ChIP_GO_P7_H3K36me3_rep2
GSM3084618
ChIP_GO_P10_H3K36me3_rep1
GSM3084619
ChIP_GO_P10_H3K36me3_rep2
GSM3084620
ChIP_GO_P14_H3K36me3_rep1
GSM3084621
ChIP_GO_P14_H3K36me3_rep2
GSM3084622
ChIP_FGO_H3K36me3_rep1
GSM3084623
ChIP_FGO_H3K36me3_rep2
GSM3084624
ChIP_MII_H3K36me3_rep1
GSM3084625
ChIP_MII_H3K36me3_rep2
GSM3084627
ChIP_1C_H3K36me3_rep1
GSM3084628
ChIP_1C_H3K36me3_rep2
GSM3084629
ChIP_Late_2C_H3K36me3_rep1
GSM3084630
ChIP_Late_2C_H3K36me3_rep2
GSM3084631
ChIP_8C_H3K36me3_rep1
GSM3084632
ChIP_8C_H3K36me3_rep2
GSM3084633
ChIP_ICM_H3K36me3_rep1
GSM3084634
ChIP_ICM_H3K36me3_rep2
GSM3084635
ChIP_mESC_10k_H3K36me3
GSM3084636
ChIP_mESC_500_H3K36me3
GSM3084637
ChIP_FGO_Dnmt3l_Con_H3K36me3_rep1
GSM3084638
ChIP_FGO_Dnmt3l_Con_H3K36me3_rep2
GSM3084639
ChIP_FGO_Dnmt3l_KO_H3K36me3_rep1
GSM3084640
ChIP_FGO_Dnmt3l_KO_H3K27me3_rep1
GSM3084641
ChIP_FGO_Dnmt3l_KO_H3K27me3_rep2
GSM3084642
ChIP_FGO_Setd2_Con_H3K4me3_rep1
GSM3084643
ChIP_FGO_Setd2_Con_H3K4me3_rep2
GSM3084644
ChIP_FGO_Setd2_Con_H3K4me3_rep3
GSM3084645
ChIP_FGO_Setd2_KO_H3K4me3_rep1
GSM3084646
ChIP_FGO_Setd2_KO_H3K4me3_rep2
GSM3084647
ChIP_FGO_Setd2_KO_H3K4me3_rep3
GSM3084648
ChIP_FGO_Setd2_Con_H3K27me3_rep1
GSM3084649
ChIP_FGO_Setd2_KO_H3K27me3_rep1
GSM3084650
ChIP_FGO_Setd2_KO_H3K27me3_rep2
GSM3084651
ChIP_FGO_Setd2_Con_H3K36me3_rep1
GSM3084652
ChIP_FGO_Setd2_Con_H3K36me3_rep2
GSM3084653
ChIP_FGO_Setd2_KO_H3K36me3_rep1
GSM3084654
ChIP_FGO_Setd2_KO_H3K36me3_rep2
GSM3084655
ChIP_1C_Setd2_Con_H3K4me3
GSM3084656
ChIP_1C_Setd2_KO_H3K4me3
GSM3177261
ChIP_1C_Setd2_KO_H3K27me3
GSM3494168
RNA_GO_P7_Setd2_Con_RNA_rep1
GSM3494169
RNA_GO_P7_Setd2_Con_RNA_rep2
GSM3494170
RNA_GO_P7_Setd2_KO_RNA_rep1
GSM3494171
RNA_GO_P7_Setd2_KO_RNA_rep2
GSM3494172
RNA_ST_8C_Setd2_Con_RNA_rep1
GSM3494173
RNA_ST_8C_Setd2_Con_RNA_rep2
GSM3494174
RNA_ST_8C_Setd2_KO_RNA_rep1
GSM3494175
RNA_ST_8C_Setd2_KO_RNA_rep2
GSM3494194
MethylC_GO_P7_Setd2_Con_5mC
GSM3494195
MethylC_GO_P7_Setd2_KO_5mC_rep1
GSM3494196
MethylC_GO_P7_Setd2_KO_5mC_rep2
GSM3494197
MethylC_FGO_Setd2_KO_5mC_rep2
GSM3494250
ChIP_Sperm_H3K36me3_rep1
GSM3494251
ChIP_Sperm_H3K36me3_rep2
GSM3494252
ChIP_PN3_IVF_H3K36me3
GSM3494253
ChIP_FGO_Dnmt3l_Con_H3K27me3_rep1
GSM3494254
ChIP_FGO_Dnmt3l_Con_H3K27me3_rep2
GSM3494255
ChIP_FGO_Dnmt3l_KO_H3K36me3_rep2
GSM3494256
ChIP_GO_P7_Setd2_KO_H3K4me3
GSM3494257
ChIP_GO_P7_Setd2_KO_H3K27me3
GSM3494258
ChIP_ST_Early2C_Setd2_KO_H3K4me3
GSM3494259
ChIP_ST_Early2C_Setd2_KO_H3K27me3
GSM3494260
ChIP_ST_8C_Setd2_KO_H3K4me3
GSM3494261
ChIP_ST_8C_Setd2_KO_H3K27me3
GSM3494262
ChIP_FGO_Setd2_Con_H3K27me3_rep2
GSM4130751
ChIP_FGO_Setd2_Con_H3K27ac_rep1
GSM4130752
ChIP_FGO_Setd2_Con_H3K27ac_rep2
GSM4130753
ChIP_FGO_Setd2_KO_H3K27ac_rep1
GSM4130754
ChIP_FGO_Setd2_KO_H3K27ac_rep2
This SuperSeries is composed of the following SubSeries:
GSE112832
SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development [RNA-seq]
GSE112833
SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development [Bisulfite-seq]
GSE112834
SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development [ChIP-seq]
Relations
BioProject
PRJNA449119
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Format
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Supplementary data files not provided
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