NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE113251 Query DataSets for GSE113251
Status Public on Apr 18, 2018
Title Deletion of Nkx2-5 in trabecular myocardium reveals the developmental origins of pathological heterogeneity associated with ventricular non-compaction cardiomyopathy
Organism Mus musculus
Experiment type Expression profiling by array
Summary Left ventricular non-compaction (LVNC) is a rare cardiomyopathy associated with a hypertrabeculated phenotype and a large spectrum of symptoms. The developmental origins and mechanistic basis of varying severity of this pathology are unknown. To investigate these issues, we inactivated the cardiac transcription factor Nkx2-5 in trabecular myocardium at different stages of trabecular morphogenesis. Conditional deletion of Nkx2-5 at embryonic stages, during trabecular formation, provokes a severe hypertrabeculated phenotype associated with subendocardial fibrosis and Purkinje fiber hypoplasia. A milder phenotype was observed after Nkx2-5 deletion at fetal stages, during trabecular compaction. A longitudinal study of cardiac function in adult Nkx2-5 conditional mutant mice demonstrates that excessive trabeculation is associated with complex ventricular conduction defects, progressively leading to strain defects, and, in 50% of mutant mice, to heart failure. Progressive impaired cardiac function correlates with conduction and strain defects independently of the degree of hypertrabeculation. Transcriptomic analysis of molecular pathways reflects myocardial remodeling with a larger number of differentially expressed genes in the severe versus mild phenotype and identifies Six1 as a marker upregulated in hypertrabeculated hearts. Our results provide insights into the etiology of LVNC and link its pathogenicity with compromised trabecular development including compaction defects and ventricular conduction system hypoplasia.
 
Overall design Fifty mice were assigned to three groups: Nkx2-5Δtrab mice received tamoxifen injections at embryonic stages (E10.5 and E11.5), Nkx2-5Δcomp mice received tamoxifen injections at fetal stages (E13.5 and E14.5), and control mice without tamoxifen injection. For transcriptomic analyse, n=4 per group at 6 month-old mutant mice.
Web link http://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007502
 
Contributor(s) Choquet C, Nguyen T, Sicard P, Buttigieg E, Tran T, Kober F, Varlet I, Costa MW, Harvey RP, Nguyen C, Rihet P, Richard S, Bernard M, Kelly RG, Lalevée N, Miquerol L
Citation(s) 29979676
Submission date Apr 17, 2018
Last update date Jul 19, 2018
Contact name Thom Thi Tran
E-mail(s) thi-thom.tran@inserm.fr
Phone 33(0)491 82 87 25
Organization name INSERM
Department Marseille
Lab TAGC UMR1090
Street address 163, avenue de Luminy
City Marseille
ZIP/Postal code 13009
Country France
 
Platforms (1)
GPL13912 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version)
Samples (12)
GSM3100915 CT1
GSM3100916 CT2
GSM3100917 CT3
Relations
BioProject PRJNA450553

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113251_RAW.tar 152.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap