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Series GSE113381 Query DataSets for GSE113381
Status Public on Apr 13, 2019
Title RNA_Seq-based global transcriptome analysis of Streptococcus pyogenes M1T15448 lacking Spy_1476/SP-TyK
Organism Streptococcus pyogenes
Experiment type Expression profiling by high throughput sequencing
Summary We report the mRNA expression profile of Streptococcus pyogenes M1T15448 strain-derived mutant lacking the spy_1476/sp-tyk gene encoding tyrosine kinase/GTP-ATP hydrolase
 
Overall design Measuring transcriptome profiling in S.pyogenes M1T1DTyK mutants vs M1T1-WT wild-type strains
 
Contributor(s) Pancholi V
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 19, 2018
Last update date Apr 14, 2019
Contact name Vijay Pancholi
E-mail(s) vijay.pancholi@osumc.edu
Phone 614-688-8053
Organization name Ohio State University
Department Pathology
Lab Bacterial Pathogenesis
Street address 420W 12th Ave, TMRF-288
City Columbus
State/province OH
ZIP/Postal code 43210
Country USA
 
Platforms (1)
GPL24912 Illumina HiSeq 4000 (Streptococcus pyogenes)
Samples (6)
GSM3104653 M1T1_WT-1
GSM3104654 M1T1_WT-2
GSM3104655 M1T1_WT-3
Relations
BioProject PRJNA451018
SRA SRP141196

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113381_DTK_vs_wt_complete_average_DEGs.xlsx 254.8 Kb (ftp)(http) XLSX
GSE113381_DTK_vs_wt_true_DEGS_.xlsx 62.0 Kb (ftp)(http) XLSX
GSE113381_DTKvsWT.DEG_down.xlsx 27.6 Kb (ftp)(http) XLSX
GSE113381_DTKvsWT.DEG_up.xlsx 26.5 Kb (ftp)(http) XLSX
GSE113381_RAW.tar 390.0 Kb (http)(custom) TAR (of XLSX)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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