NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE113400 Query DataSets for GSE113400
Status Public on Dec 26, 2018
Title Determine the role of TXNDC9 in hepatocellular carcinoma progression
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Thioredoxin Domain Containing 9 (TXNDC9) is a member of the thioredoxin family. The exact function of this protein is not known. This experiment is a transcriptiome profiling of TXNDC9 dependent RNA expression in hepatocellular carcinoma cell line HepG2. By compairing the gene expression profile of WT and TXNDC9 knockout, we identified some genes directly or indirectly regulated by TXNDC9 in hepatocellular carcinoma.
 
Overall design RNA-seq analysis of wild Type and TXNDC9 knockout HepG2 cells
 
Contributor(s) Chen D, Liu S
Citation(s) 30382079
Submission date Apr 19, 2018
Last update date Mar 20, 2019
Contact name Dawei Chen
E-mail(s) dwchen85@163.com
Organization name School of Medicine, Southeast University
Department Jiangyin People's Hospital
Street address No. 163, Shoushan Road
City Jiangyin
State/province Jiangsu
ZIP/Postal code 214400
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (4)
GSM3105101 WT rep1
GSM3105102 WT rep2
GSM3105103 TXNDC9-KO rep1
Relations
BioProject PRJNA451023
SRA SRP141214

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113400_all_FPKM_expression.txt.gz 1.3 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap