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Status |
Public on Jul 26, 2018 |
Title |
Krox20 hindbrain regulation in Zebrafish [ATAC-seq] |
Organism |
Danio rerio |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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Summary |
In the present study, we have identified six enhancers located within the zebrafish krox20 locus, using accessibility data generated by ATAC-seq and characterized their activity profiles as well as their functions and interactions in the zebrafish hindbrain . We also investigated the orthologues in six evolutionary distant vertebrates of one of these element, showing a great variety of activity profiles demonstrating the striking evolutionary flexibility of this element .
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Overall design |
Chromatin accessibility assessed by ATAC-seq from Zebrafish embryonic samples at different time points and anatomical positions.
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Contributor(s) |
Torbey P, Collombet S, Charnay P, Gilardi-Hebenstreit P |
Citation(s) |
30080860 |
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Submission date |
Apr 20, 2018 |
Last update date |
Feb 18, 2019 |
Contact name |
samuel Collombet |
E-mail(s) |
samuelcollombet@gmail.com
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Organization name |
Ecole Normale Superieure
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Department |
Biology
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Lab |
Thieffry
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Street address |
46 rue d'Ulm
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City |
Paris |
ZIP/Postal code |
75005 |
Country |
France |
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Platforms (1) |
GPL20828 |
Illumina NextSeq 500 (Danio rerio) |
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Samples (10)
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Relations |
BioProject |
PRJNA451199 |
SRA |
SRP141428 |