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Series GSE113471 Query DataSets for GSE113471
Status Public on Jul 26, 2018
Title Krox20 hindbrain regulation in Zebrafish [ATAC-seq]
Organism Danio rerio
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In the present study, we have identified six enhancers located within the zebrafish krox20 locus, using accessibility data generated by ATAC-seq and characterized their activity profiles as well as their functions and interactions in the zebrafish hindbrain . We also investigated the orthologues in six evolutionary distant vertebrates of one of these element, showing a great variety of activity profiles demonstrating the striking evolutionary flexibility of this element .
 
Overall design Chromatin accessibility assessed by ATAC-seq from Zebrafish embryonic samples at different time points and anatomical positions.
 
Contributor(s) Torbey P, Collombet S, Charnay P, Gilardi-Hebenstreit P
Citation(s) 30080860
Submission date Apr 20, 2018
Last update date Feb 18, 2019
Contact name samuel Collombet
E-mail(s) samuelcollombet@gmail.com
Organization name Ecole Normale Superieure
Department Biology
Lab Thieffry
Street address 46 rue d'Ulm
City Paris
ZIP/Postal code 75005
Country France
 
Platforms (1)
GPL20828 Illumina NextSeq 500 (Danio rerio)
Samples (10)
GSM3106659 95%epiboly_wholeEmbryo_rep1
GSM3106660 95%epiboly_wholeEmbryo_rep2
GSM3106661 5ss_HindBrain_rep1
Relations
BioProject PRJNA451199
SRA SRP141428

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Supplementary file Size Download File type/resource
GSE113471_RAW.tar 1.7 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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