|
| Status |
Public on Oct 16, 2018 |
| Title |
Assaying RNA Structure with LASER-seq |
| Organisms |
Escherichia coli; Saccharomyces cerevisiae; Homo sapiens |
| Experiment type |
Other
|
| Summary |
structure probing of ribosomes
|
| |
|
| Overall design |
Purified and in-vivo ribosomes are probed with Naz to identify structural features
|
| |
|
| Contributor(s) |
Zinshteyn B, Chan D, England W, Feng C, Green R, Spitale RC |
| Citation(s) |
30476193 |
| |
| Submission date |
Apr 23, 2018 |
| Last update date |
Mar 27, 2019 |
| Contact name |
Boris Zinshteyn |
| E-mail(s) |
zinshteyn.boris@gmail.com
|
| Organization name |
Johns Hopkins University School of Medicine
|
| Department |
Molecular Biology and Genetics
|
| Lab |
Green
|
| Street address |
725 N Wolfe St, PCTB 714
|
| City |
Baltimore |
| State/province |
Maryland |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL16791 |
Illumina HiSeq 2500 (Homo sapiens) |
| GPL17342 |
Illumina HiSeq 2500 (Saccharomyces cerevisiae) |
| GPL18133 |
Illumina HiSeq 2500 (Escherichia coli) |
|
| Samples (37)
|
|
| Relations |
| BioProject |
PRJNA451460 |
| SRA |
SRP142310 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE113529_K562_mutation_counts.tsv.gz |
54.6 Kb |
(ftp)(http) |
TSV |
| GSE113529_K562_mutation_fractions.tsv.gz |
138.5 Kb |
(ftp)(http) |
TSV |
| GSE113529_e_coli_batch2_laser_raw_mutation_counts.tsv.gz |
131.8 Kb |
(ftp)(http) |
TSV |
| GSE113529_e_coli_batch2_laser_raw_mutation_fractions.tsv.gz |
571.7 Kb |
(ftp)(http) |
TSV |
| GSE113529_e_coli_laser_raw_mutation_counts.tsv.gz |
141.4 Kb |
(ftp)(http) |
TSV |
| GSE113529_e_coli_laser_raw_mutation_fractions.tsv.gz |
631.9 Kb |
(ftp)(http) |
TSV |
| GSE113529_e_coli_laser_rt_stop_counts.tsv.gz |
200.3 Kb |
(ftp)(http) |
TSV |
| GSE113529_s_cerevisiae_raw_mutation_counts.tsv.gz |
57.0 Kb |
(ftp)(http) |
TSV |
| GSE113529_s_cerevisiae_raw_mutation_fractions.tsv.gz |
133.9 Kb |
(ftp)(http) |
TSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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