|
| Status |
Public on May 22, 2018 |
| Title |
Epigenomics of Medicago truncatula |
| Organism |
Medicago truncatula |
| Experiment type |
Expression profiling by high throughput sequencing
Methylation profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
Cytosine methylation is a base modification that is often used by genomes to store information that is stably inherited through mitotic cell divisions. Most cytosine DNA methylation is stable throughout different cell types or by exposure to different environmental conditions in plant genomes. Here, we profile the epigenomes of ~100 Medicago truncatula lines to explore the extent of natural epigenomic variation. We also use these data to determine the extent to which DNA methylation variants are linked to genetic variations.
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| |
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| Overall design |
97 MethylC-seq, 87 RNA-seq and 89 smallRNA-seq for Medicago truancatula
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| |
|
| Contributor(s) |
Schmitz RJ, Jackson SA, Libault M |
| Citation missing |
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| |
| Submission date |
May 21, 2018 |
| Last update date |
Sep 05, 2018 |
| Contact name |
Robert J Schmitz |
| E-mail(s) |
schmitz@uga.edu
|
| Organization name |
University of Georgia
|
| Department |
Genetics
|
| Street address |
B416 Davison Life Sciences
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30602 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL17491 |
Illumina HiSeq 2000 (Medicago truncatula) |
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| Samples (273)
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| Relations |
| BioProject |
PRJNA472400 |
| SRA |
SRP148608 |
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