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Series GSE114798 Query DataSets for GSE114798
Status Public on May 23, 2018
Title Unwavering Pathobiology of Volumetric Muscle Loss Injury
Organism Sus scrofa domesticus
Experiment type Expression profiling by high throughput sequencing
Summary Volumetric muscle loss (VML) resulting from extremity trauma presents chronic and persistent functional deficits which ultimately manifest disability. Acellular biological scaffolds, or decellularized extracellular matrices (ECMs), embody an ideal treatment platform due to their current clinical use for soft tissue repair, off-the-shelf availability, and zero autogenous donor tissue burden. ECMs have been reported to promote functional skeletal muscle tissue remodeling in small and large animal models of VML injury, and this conclusion was reached in a recent clinical trial that enrolled 13 patients. However, numerous other pre-clinical reports have not observed ECM-mediated skeletal muscle regeneration. The current study was designed to reconcile these discrepancies. The capacity of ECMs to orchestrate functional muscle tissue remodeling was interrogated in a porcine VML injury model using unbiased assessments of muscle tissue regeneration and functional recovery. Here, we show that VML injury incites an overwhelming inflammatory and fibrotic response that leads to expansive fibrous tissue deposition and chronic functional deficits, which ECM repair does not augment.
 
Overall design RNA-Seq time couse of muscle volumetric muscle loss injury healing with controls
 
Contributor(s) Ricke DO, Aguilar C
Citation(s) 29030619
Submission date May 22, 2018
Last update date May 24, 2018
Contact name Darrell Orlyn Ricke
E-mail(s) Darrell.Ricke@ll.mit.edu
Phone 1-781-981-8323
Organization name MIT Lincoln Laboratory
Department Group 48 Bioengineering Systems & Technology
Lab Bioinformatics
Street address 244 Wood Street
City Lexington
State/province MA
ZIP/Postal code 02421-6426
Country USA
 
Platforms (1)
GPL24919 Illumina HiSeq 2500 (Sus scrofa domesticus)
Samples (12)
GSM3150333 PV.013_L_PT4 RNA-Seq
GSM3150334 PV.014_R_PT1 RNA-Seq
GSM3150335 PV.016_L_PT5 RNA-Seq
Relations
BioProject PRJNA472640
SRA SRP148771

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114798_Pig_VML_abundance.txt.gz 570.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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