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Series GSE114949 Query DataSets for GSE114949
Status Public on May 08, 2019
Title The prominent transcriptional and metabolites changes of Mycobacterium bovis BCG str. Tokyo 172 induced by vitamin B1
Organism Mycobacterium tuberculosis variant bovis
Experiment type Expression profiling by high throughput sequencing
Summary Vitamin B1 (VB1) is a key dietary nutrient and crucial cofactor, which exhibits a series of regulatory functions on cellular processes and the activation of the immune system. To date, the precise effect of VB1 on Mycobacterium tuberculosis has not been fully described. In the present study, the direct influence of VB1 treatment on M. bovis BCG was determined using RNA-sequencing and LC/MS. The selection of this strain was used due to its common physiological features with M.tuberculosis. The investigation of the M. bovis BCG transcription demonstrated significant changes in certain metabolic and cellular process such as the decrease in fatty acid, cholesterol and glycolipid catabolism, the decrease in DNA replication and protein translation, the reduction in cell division and cell wall formation. LC/MS indicated that most of amino acids and ADP decreased in VB1 processed culture. In addition, growth assays indicated that VB1 inhibited the BCG growth rate in vitro. This study will be benefit for our deeply understanding for impact of VB1 to M.tuberculosis.
 
Overall design 2 groups (control and treated group), each group contain triplicates
 
Contributor(s) Song N, Li Z, Cui Z, Chen L, Cui Y, Dang G, Li Z, Li H, Liu S
Citation(s) 31117936, 32390998
Submission date May 25, 2018
Last update date May 19, 2020
Contact name Ningning Song
E-mail(s) songning19810508@hotmail.com
Phone 0451-50151732
Organization name Harbin Veterinary Research Institute
Street address No.678. Haping Road
City harbin
ZIP/Postal code 150069
Country China
 
Platforms (1)
GPL25040 HiSeq X Ten (Mycobacterium bovis)
Samples (6)
GSM3160698 control 1
GSM3160699 control 2
GSM3160700 control 3
Relations
BioProject PRJNA473165
SRA SRP149005

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114949_FPKM.txt.gz 152.9 Kb (ftp)(http) TXT
GSE114949_count.txt.gz 60.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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