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Series GSE115131 Query DataSets for GSE115131
Status Public on Jun 01, 2018
Title Overexpression of chicken IRF7 increased viral replication and programmed cell death to the avian influenza virus infection through TGF-beta/FoxO signaling axis in DF-1
Organism Gallus gallus
Experiment type Expression profiling by high throughput sequencing
Summary To elucidate the functional role of chicken IRF7 against avian influenza virus (AIV) infection, we generated inducible IRF7 overexpression DF-1 cell lines that could fine control the IRF7 expression level and performed in vitro infection using low pathogenic AIVs (LPAIVs) followed by RNA-seq.
 
Overall design Transcriptiome analysis of either low pathgenic influenza virus (H6N2) or mock infected chicken IRF7 overexpression DF-1 cell lines and respective control cell line
 
Contributor(s) Kim T, Zhou H
Citation(s) 30356848
Submission date May 30, 2018
Last update date Oct 29, 2018
Contact name Huaijun Zhou
E-mail(s) hzhou@ucdavis.edu
Organization name UC Davis
Street address Meyer 3307, One shields Ave.
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
 
Platforms (1)
GPL23499 Illumina HiSeq 4000 (Gallus gallus)
Samples (8)
GSM3167424 Control Mock rep 1
GSM3167425 Control Mock rep 2
GSM3167426 CuO-IRF7 Mock rep 1
Relations
BioProject PRJNA473844
SRA SRP149379

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115131_raw_read_counts.csv.gz 295.9 Kb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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