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Series GSE115709 Query DataSets for GSE115709
Status Public on Jul 23, 2018
Title Epigenome of C. elegans sperm, oocytes, and early embryos (MNase-seq, ChIP-seq, RNA-seq)
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Third-party reanalysis
Summary This SuperSeries is composed of the SubSeries listed below.
The reanalyzed early embryo ChIP-seq data can be found in the GSE115704 SubSeries.
 
Overall design Refer to individual Series
 
Citation(s) 30333496
Submission date Jun 12, 2018
Last update date Oct 22, 2018
Contact name Susan Strome
E-mail(s) sstrome@ucsc.edu
Organization name UC Santa Cruz
Department MCD Biology
Street address 1156 High St
City Santa Cruz
State/province CA
ZIP/Postal code 95064
Country USA
 
Platforms (2)
GPL9309 Illumina Genome Analyzer (Caenorhabditis elegans)
GPL13657 Illumina HiSeq 2000 (Caenorhabditis elegans)
Samples (54)
GSM3187950 H3K27me3 oocyte ChIP, rep1
GSM3187951 H3K27me3 oocyte ChIP, rep2
GSM3187952 H3K27me3 sperm ChIP, rep1
This SuperSeries is composed of the following SubSeries:
GSE115704 Distribution of histone modifications across the genome in C. elegans sperm vs. oocytes vs. early embryos
GSE115705 Nucleosome occupancy of C. elegans wild-type (N2) early stage embryos vs. mature sperm from him-8(e1489) males
GSE115707 C. elegans germlines that inherited only paternal chromosomes (non-Mendelian inheritance, 'red-head worms') and the germlines of their offspring vs. germlines that inherited both maternal and paternal chromosomes (Mendelian inheritance, HBR1280 control)
Relations
BioProject PRJNA475792

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115709_RAW.tar 2.4 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp

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