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Series GSE116155 Query DataSets for GSE116155
Status Public on Nov 21, 2019
Title Transcriptome of day 6 EBs [WT, hWDR5iRescue,Wdr5 KO clone #3 with or without early (T12h) and late rescue (T48h)]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study describes the transcriptome profiling of day 6 SFEBq embryonic bodies (EBs): 1) WT; 2) Wdr5 KO ; 3) Wdr5 KO with T12h hWDR5 rescue; 4) Wdr5 KO with T48h hWDR5 rescue
 
Overall design RNA-Seq profiling on mouse Rx:GFP KI embryonic stem cell during differeniatiation via SFEBq method. Biological duplicates of each sample are labled as rep1/2. Technical repeats of each sample are labeled as Run1/2
 
Contributor(s) Rao R
Citation(s) 31940490
Submission date Jun 22, 2018
Last update date Feb 20, 2020
Contact name Fengbiao Mao
E-mail(s) fmao@med.umich.edu
Organization name University of Michigan
Department Department of Pathology
Lab Yali Dou
Street address 1301 Catherine St
City Ann Arbor
State/province Michigan
ZIP/Postal code 48109
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (16)
GSM3211494 Run1 WT-rep1
GSM3211495 Run1 WT-rep2
GSM3211496 Run1 Wdr5 KO-rep 1
Relations
BioProject PRJNA477503
SRA SRP151117

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116155_RNA-seq.genes.count_tracking.txt.gz 3.5 Mb (ftp)(http) TXT
GSE116155_RNA-seq.genes.fpkm_tracking.txt.gz 3.9 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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