|
| Status |
Public on Apr 01, 2023 |
| Title |
Evolutionary dynamics of small RNA regulation through genomic hybridization in sugarcane |
| Organisms |
Saccharum robustum; Saccharum spontaneum; Saccharum hybrid cultivar; Saccharum barberi; Saccharum sinense; Saccharum hybrid cultivar SP70-1143; Saccharum hybrid cultivar RB867515 |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
The small RNAs and their targets were characterized in sugarcane wild species and cultivars. This was done by deep sequencing the small RNA populations and uncapped mRNAs of young leaves from mature plants.
|
| |
|
| Overall design |
Screening of the sRNA transcriptome of wild sugarcane species and cultivars
|
| |
|
| Contributor(s) |
Grativol C, Lee T, Kakrana A, Thiebaut F, Hemerly AS, Meyers BC, Ferreira PC |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 22, 2018 |
| Last update date |
Apr 01, 2023 |
| Contact name |
Blake C. Meyers |
| E-mail(s) |
bmeyers@danforthcenter.org
|
| Phone |
314-587-1422
|
| Organization name |
Donald Danforth Plant Science Center
|
| Lab |
Meyers lab
|
| Street address |
975 N Warson Road
|
| City |
St. Louis |
| State/province |
MO |
| ZIP/Postal code |
63132 |
| Country |
USA |
| |
|
| Platforms (7)
|
| GPL25234 |
Illumina Genome Analyzer II (Saccharum spontaneum) |
| GPL25236 |
Illumina Genome Analyzer II (Saccharum hybrid cultivar RB867515) |
| GPL25237 |
Illumina Genome Analyzer II (Saccharum sinense) |
| GPL25238 |
Illumina Genome Analyzer II (Saccharum barberi) |
| GPL25239 |
Illumina Genome Analyzer II (Saccharum robustum) |
| GPL25240 |
Illumina Genome Analyzer II (Saccharum hybrid cultivar SP70-1143) |
| GPL28190 |
Illumina Genome Analyzer II (Saccharum hybrid cultivar) |
|
| Samples (14)
|
|
| Relations |
| BioProject |
PRJNA477541 |
| SRA |
SRP151143 |
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